Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30934
         (710 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22...    28   1.1  
SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces...    27   2.0  
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc...    26   6.1  
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz...    26   6.1  
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po...    26   6.1  
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo...    26   6.1  
SPAC11D3.06 |||MatE family transporter|Schizosaccharomyces pombe...    25   8.1  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   8.1  

>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
 Frame = -2

Query: 541 ANYVIFQEKLWKMQHLI--LYISYIVLLDYRNKMIIFKLQQIEVSSVKAKHLSHLTNL 374
           +N +   E L  + H +  LY+S+  L  +    ++  L+ ++VS+   KHLS+L  L
Sbjct: 201 SNRITQFENLACLSHCLRELYVSHNGLTSFSGIEVLENLEILDVSNNMIKHLSYLAGL 258


>SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 497

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +2

Query: 497 MLHFPKFLLKNYIICIGDVIAPYVPYDDFFSS*VRPRSVML 619
           + H+  F   N++     VIAP+V +  F S  +  R +ML
Sbjct: 339 LYHYNPFQSGNFLSLSSLVIAPFVFFSTFLSKWLEDRQIML 379


>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1333

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = +1

Query: 19  GSPLHPTTIKYRVNNIRTSLSISHIRCYEVTYAIFANTELNMRKYI 156
           G  + P   +Y +N I   +  SH+ CY     I + +E    K++
Sbjct: 537 GISIAPAHFQYFINTILGEVKESHVVCYMDNILIHSKSESEHVKHV 582


>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
           element|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1333

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = +1

Query: 19  GSPLHPTTIKYRVNNIRTSLSISHIRCYEVTYAIFANTELNMRKYI 156
           G  + P   +Y +N I   +  SH+ CY     I + +E    K++
Sbjct: 537 GISIAPAHFQYFINTILGEVKESHVVCYMDNILIHSKSESEHVKHV 582


>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 875

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 256 CFYIIPNFFIFSHQNQLNRSSRSRVLARLTNSNSFLYIP 372
           CF I    +I   Q+ ++   R ++L  LTNS S + +P
Sbjct: 360 CFIIEQLLYIGLSQDMVDEIGRRKLLKSLTNSLSTMALP 398


>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
           element|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1333

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = +1

Query: 19  GSPLHPTTIKYRVNNIRTSLSISHIRCYEVTYAIFANTELNMRKYI 156
           G  + P   +Y +N I   +  SH+ CY     I + +E    K++
Sbjct: 537 GISIAPAHFQYFINTILGEVKESHVVCYMDNILIHSKSESEHVKHV 582


>SPAC11D3.06 |||MatE family transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 455

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 9/36 (25%), Positives = 21/36 (58%)
 Frame = -3

Query: 297 LVRKYKKVRNNIKTNNFVFSLMCPLNVSFIYRLRHY 190
           L++K+ + +   +  +++  +  PLNV+  + L HY
Sbjct: 146 LLKKFLQTQEITRAGSYILLVTSPLNVALNFLLVHY 181


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +1

Query: 247  KIVCFYIIPNFFIFSHQNQLNRSSRSRVLARLTNSNSFL 363
            K V  Y+  N F+F+  N  N  +  R+L+ L    +++
Sbjct: 1901 KAVSAYLGKNVFVFNCDNAFNYKTIQRILSGLAQIGTYI 1939


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,595,028
Number of Sequences: 5004
Number of extensions: 49720
Number of successful extensions: 121
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)