Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30934
         (710 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0543 + 19272389-19272534,19273337-19273496,19273584-192737...    28   8.4  

>07_03_0543 +
           19272389-19272534,19273337-19273496,19273584-19273741,
           19273852-19273945,19274082-19274198,19275119-19275229,
           19275309-19275396,19275615-19275718,19275796-19275867,
           19275950-19276039,19276151-19276308,19276746-19276752,
           19277140-19277194,19277273-19277421,19277543-19277664,
           19277916-19278105
          Length = 606

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
 Frame = -2

Query: 535 YVIFQEKLWKMQHLILYISYIVLLDYRNKMI-IFKLQQIEVSSVKAKHLSHLTNL 374
           Y   +EK   ++H +LY +Y + L  + K++   K+ ++ +S  KA+ L HL  +
Sbjct: 113 YKQLEEKRMFLEHALLYDAYALFLFSKGKVLEAGKVYEVGISR-KAEPLDHLKKM 166


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,403,241
Number of Sequences: 37544
Number of extensions: 239737
Number of successful extensions: 332
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 332
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)