Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30933
(565 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr... 169 3e-43
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 28 1.1
SPBC947.13 |rba50||RNA polymerase II associated protein |Schizos... 27 1.4
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 27 1.9
SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa... 27 1.9
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 26 3.3
SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe... 26 3.3
SPBC1921.01c |rpl3701|rpl37-1, rpl37|60S ribosomal protein L37|S... 26 4.4
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces... 25 5.8
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual 25 5.8
SPAC890.08 |rpl31||60S ribosomal protein L31|Schizosaccharomyces... 25 5.8
>SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 473
Score = 169 bits (410), Expect = 3e-43
Identities = 72/127 (56%), Positives = 98/127 (77%)
Frame = +3
Query: 183 EKIPKEQEKIREFRKKHGSTKVGEVTVDMMYGGMRGIKGLVWETSVLDADEGIRFRGLSI 362
E IP++Q +I++FR +HG +GEVT++ MYGG RG++ L+WE SVLD +EGIRFRG +I
Sbjct: 48 ELIPEKQAEIKKFRAEHGQDVIGEVTINQMYGGARGVRSLIWEGSVLDPNEGIRFRGYTI 107
Query: 363 PECQQQLPKAKGGEEPLPEGLFWLLVTGDIPTEXQAKALSKEWAARAELPAHVVTMLNNM 542
PECQ+ LP + G++PLPE LFWLLVTG+IPT Q +ALS +WAAR++LP V +++
Sbjct: 108 PECQKLLPSSPNGKQPLPESLFWLLVTGEIPTLSQVQALSADWAARSQLPKFVEELIDRC 167
Query: 543 PGKLHPM 563
P LHPM
Sbjct: 168 PPTLHPM 174
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 27.9 bits (59), Expect = 1.1
Identities = 17/39 (43%), Positives = 23/39 (58%)
Frame = -3
Query: 191 NLFPGEYFLNSSVQRLDLEVELSQSDMLSAILRVLEDVI 75
N+ P E + N VQ+ DLE EL + D+L+A DVI
Sbjct: 1066 NIEPSEMYRNHLVQKADLEKELPE-DVLNAEFPDGTDVI 1103
>SPBC947.13 |rba50||RNA polymerase II associated protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 27.5 bits (58), Expect = 1.4
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = -3
Query: 143 DLEVELSQSDMLSAILRVLEDVILNRAIFKAAERKLPHK 27
DLE+E +Q ++ + I L +++ RA K AER+L +
Sbjct: 93 DLEIEGAQEEIRATIRDDLLEMLKKRAFKKKAERELAQR 131
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 27.1 bits (57), Expect = 1.9
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +1
Query: 160 EFKKYSPG--KRFPRNKRRSANSERSMVPLKSERS 258
E +K++ G KR KR S +SE+ V LKS S
Sbjct: 105 ELRKHAKGEGKRSKNRKRSSKHSEKQAVDLKSSNS 139
>SPBC530.15c ||SPBC661.01|spermidine family transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 516
Score = 27.1 bits (57), Expect = 1.9
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 348 RGLSIPECQQQLPKAKGGEEPLPEGLFWLLVTGDIP 455
+G +PE + LP G P G+FWL TG+ P
Sbjct: 377 KGRPVPEAR--LPSMMIGCIVFPIGIFWLAWTGNYP 410
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 26.2 bits (55), Expect = 3.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -1
Query: 337 PSSASSTEVSQTRPLIPRMPPYIISTVTSPTLVEP 233
P S+ VS TRP IP+ PP + +S + P
Sbjct: 1056 PVSSRLPPVSATRPQIPQPPPVSTALPSSSAVSRP 1090
>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 697
Score = 26.2 bits (55), Expect = 3.3
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = -1
Query: 379 CCWHSGMDRP--RKRIPSSASSTEVSQTRPLIPRMPPYIISTVTSPTLVEP 233
C W DRP R + PSSA+ T PL + PY+ S SPT++ P
Sbjct: 51 CIWP---DRPNMRGKKPSSAART----LSPLTGIVQPYLGSHPFSPTILSP 94
>SPBC1921.01c |rpl3701|rpl37-1, rpl37|60S ribosomal protein
L37|Schizosaccharomyces pombe|chr 2|||Manual
Length = 108
Score = 25.8 bits (54), Expect = 4.4
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 9/65 (13%)
Frame = +1
Query: 289 ESKVWFGKPLCWM-----PMKES-VSVVYPSLS---ANSNCPRLRVEKNHYPKVFSGFSS 441
E++ + GK +C++ P++ S + V++ ++S NS R R N PK F
Sbjct: 41 EAQFYLGKRICFVYKSNKPVRGSKIRVIWGTVSRPHGNSGVVRARFTHNLPPKTFGASLR 100
Query: 442 LAIYP 456
+ +YP
Sbjct: 101 VMLYP 105
>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 796
Score = 25.4 bits (53), Expect = 5.8
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = -3
Query: 158 SVQRLDLEVELSQSDMLSAILRVLEDVILNRAIFKAA 48
SVQR +L ++ + D+ S I + L+D + R++ AA
Sbjct: 641 SVQRFELALDAQRLDIASQIAQELDDPLKWRSLGDAA 677
>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1097
Score = 25.4 bits (53), Expect = 5.8
Identities = 27/112 (24%), Positives = 47/112 (41%), Gaps = 8/112 (7%)
Frame = +3
Query: 54 FKNGSIQDHIFKHS*NCRKHVRLRQFYFEV*ALNRRI*K-VFSREKIPKEQEKIREFRKK 230
FKNGSI + ++ + + +R+ Q LNR + V R E+ ++ K
Sbjct: 571 FKNGSIAESVYWECSSPDERIRIPQRIIRH-ILNRHLGNNVGDRVSFRNEKFRVYVHSKI 629
Query: 231 HGSTKVGEVTVDMMYGGMRGIKGLVWETSV-------LDADEGIRFRGLSIP 365
+T V +M +K L+ + + L ADE +R+ S+P
Sbjct: 630 SPNTDTYNEYVPVMEAYNEAVKSLINLSDIPLSIAEILPADESLRYSSSSVP 681
>SPAC890.08 |rpl31||60S ribosomal protein L31|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 113
Score = 25.4 bits (53), Expect = 5.8
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = -3
Query: 134 VELSQSDMLSAILRVLEDVILNRAIFKAAERKLPHKSR-QLARDR 3
V +Q M + +RV D LN+ ++K R +PH+ R +L+R R
Sbjct: 42 VAFAQKHMQTKEVRV--DPSLNKEVWKRGIRNVPHRLRLRLSRKR 84
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,284,863
Number of Sequences: 5004
Number of extensions: 45357
Number of successful extensions: 173
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -