Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30933
(565 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0702 - 5243064-5243159,5243280-5243331,5243453-5243526,524... 164 4e-41
11_05_0092 + 18984571-18984621,18984717-18984779,18984957-189849... 162 2e-40
02_02_0178 + 7490447-7490659,7490996-7491112,7491337-7491517,749... 32 0.27
07_03_0535 - 19198130-19198139,19199901-19199995,19200095-192001... 28 4.5
05_06_0227 + 26565169-26566380 28 4.5
02_04_0621 - 24502383-24502476,24502532-24504015,24504125-245041... 28 4.5
02_04_0607 - 24302582-24303075,24303150-24304197 28 4.5
09_06_0002 + 20121846-20123308,20123420-20123426 28 5.9
01_01_0066 - 513578-513730,513809-513920,514000-514163,514369-51... 28 5.9
06_01_0612 - 4429605-4431152 27 7.8
>02_01_0702 -
5243064-5243159,5243280-5243331,5243453-5243526,
5243633-5243683,5243840-5243899,5244131-5244232,
5244416-5244502,5244759-5244803,5245241-5245283,
5245371-5245499,5245599-5245676,5245762-5245811,
5246026-5246108,5246780-5246843,5246953-5247066,
5247558-5247623,5247713-5247778,5248405-5248446,
5248590-5248652,5248744-5248794
Length = 471
Score = 164 bits (399), Expect = 4e-41
Identities = 70/128 (54%), Positives = 98/128 (76%)
Frame = +3
Query: 180 REKIPKEQEKIREFRKKHGSTKVGEVTVDMMYGGMRGIKGLVWETSVLDADEGIRFRGLS 359
+E IP++Q+++++ + +HG ++G +TVDM+ GGMRG+ G++WETS+LD DEGIRFRGLS
Sbjct: 45 QELIPEQQDRLKKLKSEHGKVQLGNITVDMVLGGMRGMTGMLWETSLLDPDEGIRFRGLS 104
Query: 360 IPECQQQLPKAKGGEEPLPEGLFWLLVTGDIPTEXQAKALSKEWAARAELPAHVVTMLNN 539
IPECQ+ LP A EPLPEGL WLL+TG +PT+ Q ALSKE A+R+ +P HV ++
Sbjct: 105 IPECQKVLPTAVKDGEPLPEGLLWLLLTGKVPTKEQVDALSKELASRSSVPGHVYEAIDA 164
Query: 540 MPGKLHPM 563
+P HPM
Sbjct: 165 LPVTAHPM 172
>11_05_0092 +
18984571-18984621,18984717-18984779,18984957-18984998,
18985560-18985625,18985728-18985793,18986277-18986390,
18986592-18986655,18987399-18987481,18987703-18987752,
18987844-18987921,18988020-18988148,18988244-18988286,
18988987-18989073,18989217-18989318,18989556-18989663,
18989750-18989800,18989886-18989959,18990079-18990130,
18990216-18990311
Length = 472
Score = 162 bits (394), Expect = 2e-40
Identities = 69/128 (53%), Positives = 97/128 (75%)
Frame = +3
Query: 180 REKIPKEQEKIREFRKKHGSTKVGEVTVDMMYGGMRGIKGLVWETSVLDADEGIRFRGLS 359
+E IP++Q+++++ + +HG ++G +TVDM+ GGMRG+ G++WETS+LD +EGIRFRGLS
Sbjct: 45 QELIPEQQDRLKKLKSEHGKVQLGNITVDMVLGGMRGMIGMLWETSLLDPEEGIRFRGLS 104
Query: 360 IPECQQQLPKAKGGEEPLPEGLFWLLVTGDIPTEXQAKALSKEWAARAELPAHVVTMLNN 539
IPECQ+ LP A G EPLPEGL WLL+TG +PT+ Q ALSKE R+ +P HV ++
Sbjct: 105 IPECQKVLPTAIKGGEPLPEGLLWLLLTGKVPTKEQVDALSKELVTRSSVPGHVYKAIDA 164
Query: 540 MPGKLHPM 563
+P HPM
Sbjct: 165 LPVTAHPM 172
>02_02_0178 +
7490447-7490659,7490996-7491112,7491337-7491517,
7491594-7491679,7491785-7491889,7492059-7492121,
7492404-7492513,7492644-7492763,7492833-7492908,
7493254-7493327,7493474-7493594,7495559-7495656,
7495735-7495858,7496373-7496504
Length = 539
Score = 32.3 bits (70), Expect = 0.27
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Frame = +3
Query: 321 LDADEGI-RFRGLSIPECQQQLPKAKGGEEPLPEGLFWLLVTGDIPTEXQAKALSKEWAA 497
+D DEGI R+RG I E L ++ E + +LL+ G +PT+ Q +
Sbjct: 140 IDGDEGILRYRGYPIEE----LAESSSFVE-----VAYLLMYGSLPTQSQLAGWEFAISQ 190
Query: 498 RAELPAHVVTMLNNMPGKLHPM 563
+ +P ++ ++ MP HPM
Sbjct: 191 HSAVPQGLLDIIQAMPHDAHPM 212
>07_03_0535 -
19198130-19198139,19199901-19199995,19200095-19200154,
19200241-19200349,19200438-19200604,19200694-19200813,
19200901-19200987,19201068-19201196,19201284-19201362,
19201451-19201530,19201646-19201726,19201812-19201874,
19201963-19202139,19202381-19202476,19202610-19202729,
19202825-19202933,19203016-19203235,19203320-19203405,
19203491-19203552,19203649-19203685,19203790-19203848,
19203952-19204037,19204142-19204313
Length = 767
Score = 28.3 bits (60), Expect = 4.5
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -1
Query: 340 IPSSASSTEVSQTRPLIPRMPPYIISTVTSPT 245
+PS+A S +V+ + P I R PP + + T PT
Sbjct: 162 VPSNAKSADVASSTPKIQRPPP-VKAVTTVPT 192
>05_06_0227 + 26565169-26566380
Length = 403
Score = 28.3 bits (60), Expect = 4.5
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -2
Query: 552 VCRAYCSTLSLREPVAPPSPPIL 484
VCR++ L+ EP APP PP L
Sbjct: 31 VCRSWRVALTKAEPPAPPPPPPL 53
>02_04_0621 -
24502383-24502476,24502532-24504015,24504125-24504177,
24504871-24504984,24505068-24505202,24505960-24506055,
24506692-24506827
Length = 703
Score = 28.3 bits (60), Expect = 4.5
Identities = 18/43 (41%), Positives = 20/43 (46%)
Frame = -1
Query: 361 MDRPRKRIPSSASSTEVSQTRPLIPRMPPYIISTVTSPTLVEP 233
MDR R+R P S S S P PR P + V P L EP
Sbjct: 1 MDRLRRRNPKSVPSGSSSMKPPRPPRGPSFQAPAVPRP-LPEP 42
>02_04_0607 - 24302582-24303075,24303150-24304197
Length = 513
Score = 28.3 bits (60), Expect = 4.5
Identities = 19/48 (39%), Positives = 23/48 (47%)
Frame = +2
Query: 257 HS*YDVRWHAWNQRSGLGNLCAGCR*RNPFPWSIHP*VPTATAQG*GW 400
H DVR H R G G AG + PF W+ HP + T A+ GW
Sbjct: 85 HGHVDVRHH---HRGGAG---AGGAQQGPFQWADHPRLVTEAAEN-GW 125
>09_06_0002 + 20121846-20123308,20123420-20123426
Length = 489
Score = 27.9 bits (59), Expect = 5.9
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Frame = +1
Query: 316 LCWMPMKESVSVVYPSLSANSNCPRLRVEKNHYPK--VFSGFSS 441
+C P+++S S+ +PS S+++NC + +PK V GFS+
Sbjct: 228 VCLSPLQQS-SLAHPSPSSSTNCSLWMTKSAIFPKEVVTRGFSA 270
>01_01_0066 -
513578-513730,513809-513920,514000-514163,514369-514521,
514598-514736,514823-514923,514995-515666,515953-516038,
516112-516777,516874-517128,517231-517358,518645-518799,
518880-519133,519186-519260,519324-519399,519511-519644,
519871-520153,520692-520850,520940-521038,521142-521310,
521423-521653,522002-522114,524179-524310,524389-524469,
525641-525763
Length = 1570
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 365 RDG*TTETDSFIGIQHRGFPNQTFDSTHATVHH 267
+DG D IG++ + FP + D T A HH
Sbjct: 407 KDGELDSKDLDIGLKRKPFPRKMEDPTSADAHH 439
>06_01_0612 - 4429605-4431152
Length = 515
Score = 27.5 bits (58), Expect = 7.8
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = -1
Query: 349 RKRIPSSASSTEVSQTRPLIPRMPPYIISTVTSPT-LVEPCFFR 221
R+R+P S S V+ P P++PP + ST P+ + P F R
Sbjct: 74 RRRLPPSPSVRVVAIPFPAHPQIPPGVESTDALPSQSLFPAFLR 117
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,905,124
Number of Sequences: 37544
Number of extensions: 336890
Number of successful extensions: 1142
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1142
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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