Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30933
(565 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z30423-2|CAA83004.1| 468|Caenorhabditis elegans Hypothetical pr... 189 1e-48
U41746-9|AAA83334.3| 559|Caenorhabditis elegans Groundhog (hedg... 30 1.0
Z68318-4|CAA92693.2| 1170|Caenorhabditis elegans Hypothetical pr... 30 1.3
U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-... 28 4.0
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-... 28 4.0
AL117202-16|CAD91710.1| 121|Caenorhabditis elegans Hypothetical... 28 5.3
AC024796-11|AAK29890.2| 828|Caenorhabditis elegans Hypothetical... 28 5.3
U37429-15|AAN63412.1| 195|Caenorhabditis elegans Peroxiredoxin ... 27 7.0
Z82264-11|CAB05155.2| 262|Caenorhabditis elegans Hypothetical p... 27 9.3
AL110500-5|CAB60428.1| 1050|Caenorhabditis elegans Hypothetical ... 27 9.3
>Z30423-2|CAA83004.1| 468|Caenorhabditis elegans Hypothetical
protein T20G5.2 protein.
Length = 468
Score = 189 bits (461), Expect = 1e-48
Identities = 83/127 (65%), Positives = 101/127 (79%)
Frame = +3
Query: 183 EKIPKEQEKIREFRKKHGSTKVGEVTVDMMYGGMRGIKGLVWETSVLDADEGIRFRGLSI 362
+KIP K++ FR +HGST V V +DM+YGGMR +KG+V ETSVLD +EGIRFRG SI
Sbjct: 41 KKIPAHNAKVKSFRTEHGSTVVQNVNIDMIYGGMRSMKGMVTETSVLDPEEGIRFRGYSI 100
Query: 363 PECQQQLPKAKGGEEPLPEGLFWLLVTGDIPTEXQAKALSKEWAARAELPAHVVTMLNNM 542
PECQ+ LPKAKGGEEPLPE ++WLL TGD+P+E Q A++KEW ARA+LP HVV ML+N
Sbjct: 101 PECQKLLPKAKGGEEPLPEAIWWLLCTGDVPSEAQTAAITKEWNARADLPTHVVRMLDNF 160
Query: 543 PGKLHPM 563
P LHPM
Sbjct: 161 PDNLHPM 167
>U41746-9|AAA83334.3| 559|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 6 protein.
Length = 559
Score = 30.3 bits (65), Expect = 1.0
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -1
Query: 352 PRKRIPSSASSTEVSQTRPLIPRMPPYIISTVTSPTLVEP 233
P + P ST Q RP PR PY+ + T+ +EP
Sbjct: 226 PARPAPYIEPSTAKPQPRPQPPRTRPYVAPSTTTQRYIEP 265
>Z68318-4|CAA92693.2| 1170|Caenorhabditis elegans Hypothetical
protein T21B10.3 protein.
Length = 1170
Score = 29.9 bits (64), Expect = 1.3
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = -1
Query: 379 CCWHSG-MDRPRKRIPSSASSTEVSQTRPLIPRMPPYIISTVTSPTLVEPCFFRNSRIFS 203
C W S + P+K++PS T Q ++ P +STV+ C+FR+ +F
Sbjct: 585 CSWFSSSLQNPKKQVPSGVYKTIAEQHLDEFEQIKPEEVSTVSD------CYFRS--LF- 635
Query: 202 CSLGIFSLE 176
LG+F ++
Sbjct: 636 -ELGLFDVD 643
>U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform b protein.
Length = 1169
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -1
Query: 307 QTRPLIPRMPPYIISTVTSPTLVEPCFFRNSR 212
QTRP P++PP I+ T V+P FF+ +R
Sbjct: 365 QTRP--PQLPPVQITQPPIQTPVQPIFFQTTR 394
>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform a protein.
Length = 1876
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -1
Query: 307 QTRPLIPRMPPYIISTVTSPTLVEPCFFRNSR 212
QTRP P++PP I+ T V+P FF+ +R
Sbjct: 462 QTRP--PQLPPVQITQPPIQTPVQPIFFQTTR 491
>AL117202-16|CAD91710.1| 121|Caenorhabditis elegans Hypothetical
protein Y47D3A.20 protein.
Length = 121
Score = 27.9 bits (59), Expect = 5.3
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +1
Query: 412 YPKVFSGFSSLAIYPPXRKLK 474
+P++F GFSS+ +PP K K
Sbjct: 30 FPRLFKGFSSIFHFPPLNKPK 50
>AC024796-11|AAK29890.2| 828|Caenorhabditis elegans Hypothetical
protein Y48G1C.8 protein.
Length = 828
Score = 27.9 bits (59), Expect = 5.3
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 179 QGKDSQGTREDPRIPKEAWF 238
Q K S G R P+IPK A+F
Sbjct: 808 QPKKSDGNRRSPKIPKSAYF 827
>U37429-15|AAN63412.1| 195|Caenorhabditis elegans Peroxiredoxin
protein 2 protein.
Length = 195
Score = 27.5 bits (58), Expect = 7.0
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = +3
Query: 225 KKHGSTKVGEVTVDMMYGGMRGIKGLVWETSVLDADEGIRFRGLSIPECQQQL 383
+KHG +GE+ + ++ I + VL DEGI FRGL I + Q L
Sbjct: 89 RKHGG--LGEMNIPVLADTNHQISR---DYGVLKEDEGIAFRGLFIIDPSQNL 136
>Z82264-11|CAB05155.2| 262|Caenorhabditis elegans Hypothetical
protein C49C3.5 protein.
Length = 262
Score = 27.1 bits (57), Expect = 9.3
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +3
Query: 177 SREKIPKEQEKIREFRKKHGSTKVG 251
S EK K +E+IRE KK+G +VG
Sbjct: 140 SAEKDKKRRERIREDMKKNGLGRVG 164
>AL110500-5|CAB60428.1| 1050|Caenorhabditis elegans Hypothetical
protein Y87G2A.5 protein.
Length = 1050
Score = 27.1 bits (57), Expect = 9.3
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +3
Query: 390 AKGGEEPLPEGLFWLLVTGDIPTEXQAKALSKEWAARAEL 509
A G E+PLPE +W V+ E AKA K AE+
Sbjct: 521 ADGREQPLPEENYW--VSARTEQEALAKAAQKFQVPEAEI 558
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,832,257
Number of Sequences: 27780
Number of extensions: 259065
Number of successful extensions: 823
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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