Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30928
         (731 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_02_0099 - 6582498-6582725,6583148-6583235,6583437-6583830,658...    29   2.9  
09_02_0621 - 11307417-11307813,11308078-11308246,11308372-113084...    29   5.0  
04_01_0198 + 2357337-2357339,2357729-2357748,2358324-2358810,235...    28   8.8  

>05_02_0099 -
           6582498-6582725,6583148-6583235,6583437-6583830,
           6585855-6585990,6586413-6586931
          Length = 454

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 342 YLCGLTGNCCNHNNFIFIYKFNANG 268
           YL GL G+C    + + +Y+F ANG
Sbjct: 184 YLLGLIGHCSEGGHRLLVYEFMANG 208


>09_02_0621 -
           11307417-11307813,11308078-11308246,11308372-11308440,
           11308635-11308761,11308985-11309253,11309356-11309522,
           11309730-11309801,11310205-11310329
          Length = 464

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 354 ISWNYLCGLTGNCCNHNNFIFIYKFNANG 268
           + + YL  L G C N N+   IY++  NG
Sbjct: 218 VHYKYLVMLIGYCTNKNHLALIYEYMPNG 246


>04_01_0198 +
           2357337-2357339,2357729-2357748,2358324-2358810,
           2358977-2359387
          Length = 306

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
 Frame = -3

Query: 351 SWNYLCGLTGNCCNHNN--FIFIYKFNANGRRIPARCKLGLVEL*IQMIRMK 202
           SWN L  + G CCN  N     +Y+   NG       +  L+     MIR K
Sbjct: 131 SWNILQFMCGWCCNMENKELFLVYELMKNGNLYEYLHESELINYIRSMIRYK 182


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,910,824
Number of Sequences: 37544
Number of extensions: 214670
Number of successful extensions: 433
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)