Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30927
         (627 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces...    31   0.10 
SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-tr...    28   0.96 
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ...    27   2.2  
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|...    27   2.9  
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    26   3.9  
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    26   3.9  
SPCC663.09c |||short chain dehydrogenase |Schizosaccharomyces po...    26   5.1  
SPCC1672.09 |||triglyceride lipase-cholesterol esterase |Schizos...    25   6.8  
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |...    25   6.8  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    25   6.8  
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p...    25   9.0  
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch...    25   9.0  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    25   9.0  
SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces ...    25   9.0  
SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|c...    25   9.0  
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch...    25   9.0  

>SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 662

 Score = 31.5 bits (68), Expect = 0.10
 Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
 Frame = +3

Query: 324 EADICEVTSYVTRLGTHSAAAQCDSHIHS-DVFMESLITV-AAAIPSNIFAVLGMDRLGR 497
           EAD      Y+T     ++ +QC   + S  V M   + +    IP  I A+L + RLG 
Sbjct: 108 EADEPNQGRYITYRELLASVSQCAGALQSMGVGMGDRVAIYMPMIPETIIAMLAIVRLGA 167

Query: 498 KFFLVFATFSAGS 536
              ++FA FSA S
Sbjct: 168 IHSVIFAGFSAES 180


>SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-trans
           isomerase Wis2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 28.3 bits (60), Expect = 0.96
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = -2

Query: 332 VRFGVVVRARPLVETIEHLREPHHQTVIPDM--ECKVDCNRDRSE 204
           V FG V++ +  V TIE+L   +   V+P +  EC   C +D+ E
Sbjct: 130 VVFGKVIQGKSTVRTIENLETKNDDPVVPVVIEECGT-CTKDQIE 173


>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 528

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
 Frame = -2

Query: 539 TRASRECCKHKEELSPEPVHAEDREDIGGYGG--RDGDERLHED 414
           T  S    KH   +S EP   E+ +  G  GG  +    RLH D
Sbjct: 473 TSTSSTSSKHSTGISTEPTTGEENKQDGSVGGFFKRAFRRLHPD 516


>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 461

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -3

Query: 538 HEPAENVANTRKNFLPSLSMPRTAKILEGMA 446
           H P   +   R +FLP +S+P T  +  G +
Sbjct: 46  HAPMYGLGQRRPSFLPGVSVPDTLSVRSGFS 76


>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
           Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = -2

Query: 512 HKEELSPEPV--HAEDREDIGGYGGRDGDERL 423
           H E LSP  +  H E+ E++GGY   +G E+L
Sbjct: 203 HLEGLSPAELIAHKEESEEMGGYFIVNGIEKL 234


>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 10/34 (29%), Positives = 22/34 (64%)
 Frame = -3

Query: 229 LIVIEIVVNLSIGGTNSCLLCSTMSLNILLSLDF 128
           L +IE+++N+++  T  CLL   + + ++L + F
Sbjct: 782 LELIEVILNVNVSTTAMCLLTLLIGIYLILQVVF 815


>SPCC663.09c |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 273 PEMFNRFDEWSRTHDNAEADICEVTS 350
           PE      EWS++H N +    +VTS
Sbjct: 40  PEAATELQEWSKSHPNVKTVELDVTS 65


>SPCC1672.09 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 467

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 14/66 (21%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
 Frame = +3

Query: 396 SHIHSDVFMESLITVAAAIPSNIFAVLGMDRLGRKFFLVF---ATFSAGSCSAAMYFVYN 566
           +H++S   ++ L+     + S  F +   D+LG  +FL +   A F   +    +Y ++ 
Sbjct: 327 AHLYSYTSVKCLVHWFQIMRSAEFRMYDNDQLGHDYFLKYYKAAKFPTNNIRTPIYLIWG 386

Query: 567 KTNNLI 584
            +++L+
Sbjct: 387 GSDSLV 392


>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1032

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = -3

Query: 163 TMSLNILLSLDFGSFDSICFSGFACTRSSTRICFTGYSSLLRPVFMR*ML 14
           T SLN +LS++  + +   + G A  + S  IC   Y S  RPVF   +L
Sbjct: 367 TYSLN-MLSIEMENIEGSLYFGNA--QLSNLICVNQYLSEQRPVFFNRLL 413


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 29/128 (22%), Positives = 55/128 (42%)
 Frame = -3

Query: 484  SMPRTAKILEGMAAATVMSDSMKTSECMCESHCAAAECVPSRVTYDVTSQMSASALSCVR 305
            S P T+  +   +     S ++ TS  +  S    +   P   +  V +  +A A S + 
Sbjct: 3405 STPITSSTVVNSSTPITSSTALNTSTPITSSTVVNSS-TPI-TSSSVLNSSTAIASSSIL 3462

Query: 304  DHSSKRLNISGNHIIRP*YPIWNVKLIVIEIVVNLSIGGTNSCLLCSTMSLNILLSLDFG 125
            + S+    I+ + ++    PI +  +I   +V+  S   + +  + S++SLN  L    G
Sbjct: 3463 NSSTP---ITSSSVLNSSTPISSSTVITSSVVIGSSSVLSYASSIVSSVSLNSSLLSSSG 3519

Query: 124  SFDSICFS 101
             F S  FS
Sbjct: 3520 GFSSSAFS 3527


>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 555

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +3

Query: 408 SDVFMESLITVAAAIPSNIFAVLGMDRLGRKFFLVFATFSAGSCSAAMYFVY 563
           +D+F+ ++I  A    +   A+  +D LGR+  L+F       C    +F+Y
Sbjct: 298 TDIFLPAVILGAINFGTTFGALYTIDNLGRRNPLIFGAAFQSIC----FFIY 345


>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
           nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 13/63 (20%), Positives = 30/63 (47%)
 Frame = +3

Query: 414 VFMESLITVAAAIPSNIFAVLGMDRLGRKFFLVFATFSAGSCSAAMYFVYNKTNNLIVSA 593
           V ++S ++       ++ A L  D   + FFLV+ TF+       ++++    +++ +  
Sbjct: 79  VMLKSRMSTQKVTKQSLGAQLFYDFSPKSFFLVYLTFAVSVSCLCLFYIKGHASSIRLQW 138

Query: 594 IFS 602
           I S
Sbjct: 139 IAS 141


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1238

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = -1

Query: 129 LAPSILF--ASLASRAPDRPRGSVSLGTRL 46
           +A SIL+  AS +   PDRPR ++SL  +L
Sbjct: 364 IASSILYSTASFSRSKPDRPRLNLSLELKL 393


>SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 557

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +3

Query: 408 SDVFMESLITVAAAIPSNIFAVLGMDRLGRKFFLVFATFSAGSCSAAMYFVY 563
           +D+F+ ++I  A    +   A+  +D LGR+  L+F       C    +F+Y
Sbjct: 298 TDIFLPAVILGAINFGTTFGALYTIDNLGRRNPLIFGAAFQSIC----FFIY 345


>SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = +3

Query: 429 LITVAAAIPSNIFAVLGMDRLGRKFFLVFATFSAGS 536
           L T   AIP NIF +L           +F   SAGS
Sbjct: 141 LATFLTAIPPNIFILLVPKSFDTSMLNLFVAVSAGS 176


>SPBC215.08c |arg4||carbamoyl-phosphate synthase
           Arg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1160

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -3

Query: 334 MSASALSCVRDHSSKRLNISGNHIIRP*YPIWNVKLI 224
           +S +A+S +RD SS +  +     + P +P+   K I
Sbjct: 789 LSGAAMSVIRDESSLKDKLENASAVSPDHPVVITKFI 825


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,153,408
Number of Sequences: 5004
Number of extensions: 41267
Number of successful extensions: 168
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)