Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30927
(627 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0896 + 22373348-22374946 36 0.035
07_03_0899 + 22421038-22422642 35 0.046
07_03_0898 - 22403337-22404950 35 0.046
01_02_0036 + 10468636-10468938,10469014-10469109,10469247-104694... 34 0.11
04_04_1099 - 30886361-30886591,30886739-30886941,30887030-308875... 31 0.57
09_06_0066 + 20641144-20641459,20642899-20643290,20643379-206438... 31 0.75
08_01_0355 - 3122374-3122520,3122912-3123047,3123124-3123221,312... 29 2.3
01_05_0382 - 21661973-21662124,21662367-21662659,21662994-216631... 29 2.3
04_04_1259 + 32171412-32171805,32173341-32174193,32174263-32174581 29 4.0
09_03_0052 + 11904633-11905616,11906324-11906491,11906588-11906977 28 5.3
02_03_0135 - 15602404-15602850,15603332-15603588,15605095-156052... 28 5.3
07_03_0968 - 23027940-23028149,23028800-23029002,23029610-230301... 28 7.0
06_02_0169 - 12535102-12536062,12536949-12537646 28 7.0
03_01_0204 + 1611837-1611840,1611926-1612048,1614570-1614659,161... 28 7.0
08_02_1095 - 24278295-24278741,24279066-24279307,24279647-242797... 27 9.2
07_03_1093 + 23912303-23912467,23912671-23912801,23913079-239130... 27 9.2
02_03_0085 + 15063444-15063889,15064324-15065311 27 9.2
>07_03_0896 + 22373348-22374946
Length = 532
Score = 35.5 bits (78), Expect = 0.035
Identities = 18/73 (24%), Positives = 36/73 (49%)
Frame = +3
Query: 399 HIHSDVFMESLITVAAAIPSNIFAVLGMDRLGRKFFLVFATFSAGSCSAAMYFVYNKTNN 578
++ S++++ A PS++ + L M R+ R+ +V T +AG CS A + T
Sbjct: 357 NLGSNLYLSVTYNALAEFPSSVLSWLLMGRINRRSSVVALTAAAGVCSLACVAIPEGTGG 416
Query: 579 LIVSAIFSSVISC 617
+ + + S +C
Sbjct: 417 RMAAEVLSFFATC 429
>07_03_0899 + 22421038-22422642
Length = 534
Score = 35.1 bits (77), Expect = 0.046
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +3
Query: 402 IHSDVFMESLITVAAAIPSNIFAVLGMDRLGRKFFLVFATFSAGSCSAA 548
+ SD+++ AA +PS++ + L M R R+ LV T ++G CS A
Sbjct: 363 LSSDLYLSVAYNAAAELPSSVLSWLLMGRFNRRSSLVALTAASGLCSLA 411
>07_03_0898 - 22403337-22404950
Length = 537
Score = 35.1 bits (77), Expect = 0.046
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +3
Query: 402 IHSDVFMESLITVAAAIPSNIFAVLGMDRLGRKFFLVFATFSAGSCSAA 548
+ SD+++ AA +PS++ + L M R R+ LV T ++G CS A
Sbjct: 355 LSSDLYLSVAYNAAAELPSSVLSWLLMGRFNRRSSLVALTAASGLCSLA 403
>01_02_0036 +
10468636-10468938,10469014-10469109,10469247-10469453,
10470762-10471097,10471469-10471582,10471634-10471639
Length = 353
Score = 33.9 bits (74), Expect = 0.11
Identities = 19/40 (47%), Positives = 22/40 (55%)
Frame = -2
Query: 494 PEPVHAEDREDIGGYGGRDGDERLHEDVGVYVRVALRGGG 375
P P H R GG GG DG E E+ G R++LRGGG
Sbjct: 6 PPPKHHHHRRRRGG-GGEDGGEEEEEETG---RLSLRGGG 41
>04_04_1099 -
30886361-30886591,30886739-30886941,30887030-30887555,
30887751-30887988,30888592-30888695,30888784-30889059,
30889216-30889218
Length = 526
Score = 31.5 bits (68), Expect = 0.57
Identities = 18/71 (25%), Positives = 38/71 (53%)
Frame = +3
Query: 393 DSHIHSDVFMESLITVAAAIPSNIFAVLGMDRLGRKFFLVFATFSAGSCSAAMYFVYNKT 572
D+ ++ +VF+ S A IP + + + +DR+GRK + F+ SC ++++T
Sbjct: 369 DASLYKNVFISSF----AEIPGSFLSAMIVDRIGRKLSMASMLFT--SCVFLFPLIFSRT 422
Query: 573 NNLIVSAIFSS 605
+ L ++F +
Sbjct: 423 DILTRVSLFGA 433
>09_06_0066 +
20641144-20641459,20642899-20643290,20643379-20643829,
20643985-20644046
Length = 406
Score = 31.1 bits (67), Expect = 0.75
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = -3
Query: 205 NLSIGGTNSCLLCSTMSLNILLSLDFGSFDSI-CFSGFACTRSSTRICFTGYSSLLRPVF 29
NL +GG LL + LN L LD G + ++ G+ ++S + F SS L+ +
Sbjct: 181 NLEVGGVEGTLLANKSVLN-LYFLDSGDYSTVPSIGGYGWIKASQQFWFQQTSSNLQTKY 239
Query: 28 MR 23
M+
Sbjct: 240 MK 241
>08_01_0355 -
3122374-3122520,3122912-3123047,3123124-3123221,
3123724-3123801,3123876-3123945,3124452-3124516,
3124606-3124686,3124822-3124926,3125002-3125085,
3125175-3125250,3125358-3125436,3125526-3125646,
3125768-3125827
Length = 399
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/66 (25%), Positives = 34/66 (51%)
Frame = +3
Query: 288 RFDEWSRTHDNAEADICEVTSYVTRLGTHSAAAQCDSHIHSDVFMESLITVAAAIPSNIF 467
R +W+RTH + + +I E G + A + ++IH + + L+ A ++F
Sbjct: 245 RVRDWARTH-SGDPEIDEALKKGEDAGL-ALAKKVYAYIHKNGYKTKLMAAAIRNKQDVF 302
Query: 468 AVLGMD 485
++LG+D
Sbjct: 303 SLLGID 308
>01_05_0382 -
21661973-21662124,21662367-21662659,21662994-21663178,
21663268-21664023,21664118-21664390
Length = 552
Score = 29.5 bits (63), Expect = 2.3
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = -2
Query: 446 GRDGDERLHEDVGVYVRVALR-GGGVRAEPRHVRRHLADVRFGVVVRARPLVETIEHLRE 270
G L + VRV+ R GGG RA H R+ ++ V R RP++ H
Sbjct: 106 GEHAFHHLFDGYATLVRVSFRGGGGARATGAH-RQIESEAYRAAVARGRPVLREFSHCPA 164
Query: 269 P 267
P
Sbjct: 165 P 165
>04_04_1259 + 32171412-32171805,32173341-32174193,32174263-32174581
Length = 521
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +3
Query: 399 HIHSDVFMESLITVAAAIPSNIFAVLGMDRLGRKFFLVFATFSAG-SCSA 545
++ +++++ L+ A +P+ + L +DR GRK + +G SCSA
Sbjct: 356 NLKTNLYVSVLVNSLAEMPAYLLTALLLDRFGRKPLAIGTMLLSGISCSA 405
>09_03_0052 + 11904633-11905616,11906324-11906491,11906588-11906977
Length = 513
Score = 28.3 bits (60), Expect = 5.3
Identities = 22/52 (42%), Positives = 26/52 (50%)
Frame = -2
Query: 500 LSPEPVHAEDREDIGGYGGRDGDERLHEDVGVYVRVALRGGGVRAEPRHVRR 345
LSP+ VHA G GD RL GV++ A RG GVR HVR+
Sbjct: 182 LSPDDVHAWAHSR--ARAGAGGDLRL---AGVHLVSAARGWGVRDLLDHVRQ 228
>02_03_0135 -
15602404-15602850,15603332-15603588,15605095-15605200,
15605500-15605630,15606159-15606223,15606345-15606409,
15606560-15606955
Length = 488
Score = 28.3 bits (60), Expect = 5.3
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Frame = -3
Query: 568 LLYTKYMAAEHEPAENVA-----NTRKNFLPSLSMPRTAKILEGMAAATVMSDSM 419
L+YT ++ ++ PA+ +A RK L LS + + L+G A V D M
Sbjct: 391 LIYTAFITLQNGPADGIALVYKNGNRKEVLDFLSYEGSMRALDGPAKGMVSVDMM 445
>07_03_0968 -
23027940-23028149,23028800-23029002,23029610-23030138,
23030342-23030579,23031121-23031168,23031199-23031494
Length = 507
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +3
Query: 408 SDVFMESLITVAAAIPSNIFAVLGMDRLGRKFFL 509
++++ + L+T A P + A L +DR+GRK L
Sbjct: 358 ANLYRDVLVTSLAEFPGLVLAALLVDRIGRKVSL 391
>06_02_0169 - 12535102-12536062,12536949-12537646
Length = 552
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +3
Query: 423 ESLITVAAAIPSNIFAVLGMDRLGRK 500
+++I VA+ IP AVL +DR+GR+
Sbjct: 344 QAVIAVASTIPGYFVAVLLIDRVGRR 369
>03_01_0204 +
1611837-1611840,1611926-1612048,1614570-1614659,
1615529-1616095,1616235-1616959,1617065-1617252,
1617331-1617778
Length = 714
Score = 27.9 bits (59), Expect = 7.0
Identities = 21/69 (30%), Positives = 33/69 (47%)
Frame = +3
Query: 408 SDVFMESLITVAAAIPSNIFAVLGMDRLGRKFFLVFATFSAGSCSAAMYFVYNKTNNLIV 587
S + S +T +PS A+ MDR GR+ L++ T S + V N N +
Sbjct: 536 SSSILTSALTTFTMLPSIGIAMKCMDRYGRRSLLLY-TIPMLIVSLIILIVVNVMN---L 591
Query: 588 SAIFSSVIS 614
AIF +++S
Sbjct: 592 EAIFGAILS 600
>08_02_1095 -
24278295-24278741,24279066-24279307,24279647-24279731,
24279783-24280004
Length = 331
Score = 27.5 bits (58), Expect = 9.2
Identities = 19/82 (23%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Frame = +3
Query: 246 GYYGLMMWFPEMFNRFDEWSRTHDNAEADICEVTSYVTRLGTHSAAAQCDSHIHSDVFME 425
GY ++ + FD+ + + AD+ + + + H Q ++ +H+ FME
Sbjct: 251 GYKPTVVTPASIVGEFDQEKQRCRDIAADVLAAVTPLNEM--HKRKGQ-EAALHTVCFME 307
Query: 426 SLITVAAAIPSNIFAVL-GMDR 488
L+ V +P N+ V+ G+D+
Sbjct: 308 FLVGVMRKLPGNLRRVIAGLDQ 329
>07_03_1093 +
23912303-23912467,23912671-23912801,23913079-23913087,
23913146-23913228,23914494-23914596,23915988-23916066,
23916174-23916274,23916371-23916479
Length = 259
Score = 27.5 bits (58), Expect = 9.2
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = +3
Query: 372 HSAAAQCDSHIHSDVFMESLITVAAAIPSNIFAVLGMDR--LGRKFFLVFATFSAGSC 539
H AA C + +S V +L+ A N++ + M R R+ L TF+ G C
Sbjct: 116 HDAAVSCVEYSYSTVSGYNLVVATAGRHVNVYDLRSMSRPEQQRESPLRHGTFATGGC 173
>02_03_0085 + 15063444-15063889,15064324-15065311
Length = 477
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 457 EGMAAATVMSDSMKTSECMCESHCAAAECVPS-RVTYDVTSQMSASA 320
+G A V DS++ + MC + C+ P V VTS +A+A
Sbjct: 317 KGHAPCVVTKDSLEVTPTMCSTKCSGPTVEPDLTVAVVVTSATTAAA 363
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,888,794
Number of Sequences: 37544
Number of extensions: 307852
Number of successful extensions: 1152
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1151
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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