Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30927
         (627 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    28   0.086
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                24   1.1  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   3.2  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   3.2  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   9.8  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   9.8  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   9.8  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 27.9 bits (59), Expect = 0.086
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = -3

Query: 502 NFLPSLSMPRTAKILEGMAAATVMSDSMKTSECMCESHCAAAECVPSRVTYDVTSQ 335
           N LP ++  R A  L    A T ++D +++    CES+       P  V  D+T+Q
Sbjct: 150 NLLP-MNRNRPA-YLASKCALTTLTDCLRSELAQCESNIKVISISPDLVETDMTAQ 203


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 431 HHRRGRHTLQYLRGPRH 481
           HH+ G HT+    GP H
Sbjct: 335 HHQHGNHTMGPTMGPPH 351


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -2

Query: 503 ELSPEPVHAEDRED 462
           E   EP H EDRE+
Sbjct: 421 EFEVEPAHGEDREE 434


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 10/19 (52%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
 Frame = -2

Query: 290 TIEHLREP-HHQTVIPDME 237
           TI HLR+P HH T I + +
Sbjct: 309 TITHLRDPDHHSTDIQNCD 327


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 376 ECVPSRVTYDVTSQMS 329
           E +P+RVT  VTS ++
Sbjct: 240 EAIPARVTLGVTSLLT 255


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 376 ECVPSRVTYDVTSQMSAS 323
           E  P+RVT  VTS ++ S
Sbjct: 271 EAAPARVTLGVTSLLTLS 288


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic
          acetylcholine receptor beta1subunit protein.
          Length = 520

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 73 RICFTGYSSLLRPV 32
          R  F GY+ L+RPV
Sbjct: 32 RDLFRGYNKLIRPV 45


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,474
Number of Sequences: 438
Number of extensions: 3052
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)