Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30923
(363 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 129 1e-31
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 88 3e-19
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 86 2e-18
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 85 2e-18
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 81 7e-17
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 76 2e-15
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 61 4e-11
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 56 2e-09
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 46 1e-06
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom... 26 2.1
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large... 25 2.7
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce... 25 2.7
SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|... 25 3.6
SPCC965.06 |||potassium channel subunit |Schizosaccharomyces pom... 24 6.3
SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7 |Schizos... 24 8.3
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual 24 8.3
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 129 bits (312), Expect = 1e-31
Identities = 66/100 (66%), Positives = 78/100 (78%)
Frame = +3
Query: 60 VSLNPIRILKNXXXXXXXXXXRMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVE 239
+SLNP +I R+SSF+GAIA+GDLVKSTLGPKGMDKIL S +SG +
Sbjct: 1 MSLNPHQIFNESGIQERGENARLSSFVGAIAVGDLVKSTLGPKGMDKILQS--NSSGDIV 58
Query: 240 VTNDGATILKSIGVDNPAAKILVDMSKVQDEEVGDGTTSV 359
VTNDGATILKSI +DN AAK+LV++SKVQD+EVGDGTTSV
Sbjct: 59 VTNDGATILKSIALDNAAAKVLVNISKVQDDEVGDGTTSV 98
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 88.2 bits (209), Expect = 3e-19
Identities = 43/79 (54%), Positives = 61/79 (77%)
Frame = +3
Query: 123 RMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNPAAKI 302
R+S+ + A ++ D ++++LGPKGMDK ++ G+ G+V +TNDGATILK + V +PAAK+
Sbjct: 21 RLSNIMAARSVADAIRTSLGPKGMDK-MIQTGK--GEVILTNDGATILKHLSVLHPAAKM 77
Query: 303 LVDMSKVQDEEVGDGTTSV 359
LVD+S QD E GDGTTSV
Sbjct: 78 LVDLSAAQDVEAGDGTTSV 96
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 85.8 bits (203), Expect = 2e-18
Identities = 41/96 (42%), Positives = 63/96 (65%)
Frame = +3
Query: 72 PIRILKNXXXXXXXXXXRMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTND 251
P+ +LK +S+ +A+ D +++TLGP G DK++V + G+V ++ND
Sbjct: 9 PVIVLKEGTDDSQGRGQLLSNINACVAVQDTIRTTLGPLGADKLMVD---DRGEVVISND 65
Query: 252 GATILKSIGVDNPAAKILVDMSKVQDEEVGDGTTSV 359
GATI+K + + +PAAK LVD+++ QD EVGDGTTSV
Sbjct: 66 GATIMKLLDIVHPAAKTLVDIARAQDAEVGDGTTSV 101
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 85.4 bits (202), Expect = 2e-18
Identities = 42/79 (53%), Positives = 59/79 (74%)
Frame = +3
Query: 123 RMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNPAAKI 302
R + + AI ++VKS+LGP G+DK+LV + G V VTNDGATIL + V++PA K+
Sbjct: 23 RNQNVLATTAIANVVKSSLGPVGLDKMLVD---DIGDVTVTNDGATILSLLDVEHPAGKV 79
Query: 303 LVDMSKVQDEEVGDGTTSV 359
LV++++ QD+EVGDGTTSV
Sbjct: 80 LVELAQQQDKEVGDGTTSV 98
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 80.6 bits (190), Expect = 7e-17
Identities = 37/77 (48%), Positives = 56/77 (72%)
Frame = +3
Query: 129 SSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNPAAKILV 308
S + + ++V+++LGP+G+DKIL+S G++ VTNDGATIL + V++ AK+LV
Sbjct: 38 SHILATKTVANIVRTSLGPRGLDKILIS---PDGEITVTNDGATILDQMEVEHQIAKLLV 94
Query: 309 DMSKVQDEEVGDGTTSV 359
+SK QD+E+GDGTT V
Sbjct: 95 QLSKSQDDEIGDGTTGV 111
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 75.8 bits (178), Expect = 2e-15
Identities = 38/97 (39%), Positives = 61/97 (62%)
Frame = +3
Query: 69 NPIRILKNXXXXXXXXXXRMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTN 248
+P+ ++ +MS+ A A+ D++++ LGP+ M K+L+ G V +TN
Sbjct: 3 SPVFVMNTNGNRQVGHKAQMSNIQAAKAVADVIRTCLGPRAMLKMLLD---PVGSVLLTN 59
Query: 249 DGATILKSIGVDNPAAKILVDMSKVQDEEVGDGTTSV 359
DG IL+ I V +PAAK ++++++ QDEEVGDGTTSV
Sbjct: 60 DGHAILREIEVAHPAAKSMIELARTQDEEVGDGTTSV 96
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 61.3 bits (142), Expect = 4e-11
Identities = 29/72 (40%), Positives = 43/72 (59%)
Frame = +3
Query: 144 AIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNPAAKILVDMSKV 323
AI + D++KS LGP G K+LV +G +++T DG +L + + NP A + +
Sbjct: 25 AIGLQDVLKSNLGPTGTTKMLVD---GAGAIKLTKDGKVLLTEMQIQNPTASCIAKAATA 81
Query: 324 QDEEVGDGTTSV 359
QD+ GDGTTSV
Sbjct: 82 QDDATGDGTTSV 93
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 55.6 bits (128), Expect = 2e-09
Identities = 26/69 (37%), Positives = 47/69 (68%)
Frame = +3
Query: 153 IGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNPAAKILVDMSKVQDE 332
+ ++ +++LGP G +KI+V+ + Q +TND ATI++ + V +PAAK++VD ++ Q+
Sbjct: 38 LSEITRTSLGPNGKNKIVVN---HLQQTFLTNDAATIIRELEVIHPAAKLVVDATQQQEN 94
Query: 333 EVGDGTTSV 359
E+GD V
Sbjct: 95 ELGDAANFV 103
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 46.4 bits (105), Expect = 1e-06
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Frame = +3
Query: 123 RMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGV----DNP 290
R S G + V TLGPKG + ++ + G ++T DG T+ +S+ + +N
Sbjct: 44 RASLLTGVDTLARAVSVTLGPKGRNVLI---DQPFGSPKITKDGVTVARSVSLKDKFENL 100
Query: 291 AAKILVDMSKVQDEEVGDGTTSVT 362
A+++ D++ +E GDGTT+ T
Sbjct: 101 GARLVQDVASKTNEVAGDGTTTAT 124
>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 892
Score = 25.8 bits (54), Expect = 2.1
Identities = 22/66 (33%), Positives = 31/66 (46%)
Frame = +3
Query: 147 IAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNPAAKILVDMSKVQ 326
IA+ D+ S LG G+ RN G + DG T LKS+GV + K+ VQ
Sbjct: 324 IAVPDV--SQLGIPGVKPEAYRDSRNFGGRDA--DGVTGLKSLGVRDLTYKLSFLACMVQ 379
Query: 327 DEEVGD 344
++ D
Sbjct: 380 PDDAND 385
>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1405
Score = 25.4 bits (53), Expect = 2.7
Identities = 10/41 (24%), Positives = 20/41 (48%)
Frame = +3
Query: 153 IGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSI 275
+G++ LGP I+ +CG ++ V+ A + + I
Sbjct: 757 VGEICMDELGPANSPLIMATCGSKGSKINVSQMVACVGQQI 797
>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 25.4 bits (53), Expect = 2.7
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -3
Query: 277 PIDFNIVAPSFVTST*PEFLPQETKILSIP 188
P+D ++ +P TST PE LP+E S+P
Sbjct: 408 PLDGDVESPH-PTSTMPEALPREPLSFSLP 436
>SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 348
Score = 25.0 bits (52), Expect = 3.6
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -2
Query: 224 VPPAGN*DLIHSFGT*STLYQISYGNSTD 138
V P + L+H +G T YQ YG + D
Sbjct: 308 VVPGTSVPLVHDYGASGTGYQAGYGMALD 336
>SPCC965.06 |||potassium channel subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 344
Score = 24.2 bits (50), Expect = 6.3
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -3
Query: 313 ISTRILAAGLSTPIDFNIVAPSFVTST*PEFLPQETKILS 194
+ST IL A I N+ A F+ PE L + +IL+
Sbjct: 295 VSTTILGASKPEQIVENVKAVEFIDKLTPEILKKIDEILN 334
>SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 721
Score = 23.8 bits (49), Expect = 8.3
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -1
Query: 351 WCHLRLLHLVP*TYLLG 301
WCH+RL++L P Y+ G
Sbjct: 227 WCHVRLVYL-PMGYMYG 242
>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1029
Score = 23.8 bits (49), Expect = 8.3
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -1
Query: 132 WTSEQLQLSPLLLHF*G 82
WT QL LSP +L+F G
Sbjct: 311 WTQGQLWLSPRVLYFLG 327
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,407,829
Number of Sequences: 5004
Number of extensions: 26000
Number of successful extensions: 63
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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