Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30918
(716 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|... 83 4e-17
SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces pombe... 66 6e-12
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb... 57 3e-09
SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc... 55 1e-08
SPAC139.05 |||succinate-semialdehyde dehydrogenase |Schizosaccha... 49 8e-07
SPCC550.10 |meu8||betaine aldehyde dehydrogenase |Schizosaccharo... 45 9e-06
SPBC4.06 |||acid phosphatase |Schizosaccharomyces pombe|chr 2|||... 27 2.0
SPAC57A10.07 |||conserved protein |Schizosaccharomyces pombe|chr... 27 2.0
SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase |Schizosacc... 26 4.7
>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 503
Score = 83.0 bits (196), Expect = 4e-17
Identities = 37/70 (52%), Positives = 48/70 (68%)
Frame = +3
Query: 3 GLAAAVFTKDLDKANYFVQRLRAGTIWVNDYNVFGNQVPFGGFKQSGLGRENGPYGLRNY 182
GLAA V T ++ A L AGT+WVN YN+ +Q+PFGG+K+SG+GRE G YGL NY
Sbjct: 428 GLAAGVHTNNITNAIKVSNALEAGTVWVNCYNLLHHQIPFGGYKESGIGRELGSYGLTNY 487
Query: 183 LEVKAVVVKL 212
+ KAV + L
Sbjct: 488 TQTKAVHINL 497
>SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 65.7 bits (153), Expect = 6e-12
Identities = 31/73 (42%), Positives = 43/73 (58%)
Frame = +3
Query: 3 GLAAAVFTKDLDKANYFVQRLRAGTIWVNDYNVFGNQVPFGGFKQSGLGRENGPYGLRNY 182
GLAA FTKDL++A+ L AG +++N Q PFGG K SG+G E G G+ Y
Sbjct: 423 GLAAMCFTKDLERAHRVSDELEAGMVFINSTENSDIQAPFGGIKMSGIGNELGSNGIEMY 482
Query: 183 LEVKAVVVKLADK 221
++KAV + +K
Sbjct: 483 TQIKAVHINFNNK 495
>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 56.8 bits (131), Expect = 3e-09
Identities = 30/67 (44%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Frame = +3
Query: 3 GLAAAVFTKDLDKANYFVQRLRAGTIWVNDYNVFG-NQVPFGGFKQSGLGRENGPYGLRN 179
GL A+VF +D YF L G + VND+ F Q+PFGG K+SG GR G GLR
Sbjct: 401 GLGASVFGRDKQLCQYFTDNLETGMVAVNDFGAFYLLQMPFGGCKKSGYGRFAGYEGLRG 460
Query: 180 YLEVKAV 200
KA+
Sbjct: 461 ICNSKAI 467
>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 54.8 bits (126), Expect = 1e-08
Identities = 25/68 (36%), Positives = 39/68 (57%)
Frame = +3
Query: 3 GLAAAVFTKDLDKANYFVQRLRAGTIWVNDYNVFGNQVPFGGFKQSGLGRENGPYGLRNY 182
GLA +F+KD+ + + L+ G + N V PFGG K+SG GRE YG+ Y
Sbjct: 428 GLAGYLFSKDISRVFRVGEALQVGMVGCNTGLVSDVLSPFGGVKESGFGREGSKYGISEY 487
Query: 183 LEVKAVVV 206
L++K++ +
Sbjct: 488 LDIKSLTI 495
>SPAC139.05 |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 493
Score = 48.8 bits (111), Expect = 8e-07
Identities = 25/69 (36%), Positives = 37/69 (53%)
Frame = +3
Query: 3 GLAAAVFTKDLDKANYFVQRLRAGTIWVNDYNVFGNQVPFGGFKQSGLGRENGPYGLRNY 182
GLA VFT +L + + L G + N V + FGG KQSG G+E G G++ +
Sbjct: 423 GLAGYVFTNNLSTMIHVAKELEVGLVGANIEMVDEPFISFGGIKQSGFGKEAGRLGVQEF 482
Query: 183 LEVKAVVVK 209
+ VK + +K
Sbjct: 483 MVVKEINLK 491
>SPCC550.10 |meu8||betaine aldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 500
Score = 45.2 bits (102), Expect = 9e-06
Identities = 20/66 (30%), Positives = 37/66 (56%)
Frame = +3
Query: 3 GLAAAVFTKDLDKANYFVQRLRAGTIWVNDYNVFGNQVPFGGFKQSGLGRENGPYGLRNY 182
GL + VF+ + +F + AG +N+Y+V +++P+ G+K SGLG +G Y
Sbjct: 430 GLGSGVFSTNPKTLEFFSNNIEAGMCSLNNYHVVTHELPWIGWKHSGLGVGLSKHGYNEY 489
Query: 183 LEVKAV 200
+ +K +
Sbjct: 490 MRLKQI 495
>SPBC4.06 |||acid phosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 462
Score = 27.5 bits (58), Expect = 2.0
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +3
Query: 81 WVNDYNVFGNQVPFGGFKQSGLGRENGPYGLRNYLEVKAVVVKLADKN 224
W+ D + FGG+K S L R+ G L N L ++ +A+KN
Sbjct: 269 WLRDAETAVVEEWFGGYKVSKLMRQLGAGSLLNDLSMRMENFVVAEKN 316
>SPAC57A10.07 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 311
Score = 27.5 bits (58), Expect = 2.0
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 461 PKSQAGLGQASFFMFLCIFFNELSIIMH 378
PKS+ G+ + + LCIFF S + H
Sbjct: 29 PKSRTGIALYASLILLCIFFTIFSTMSH 56
>SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 518
Score = 26.2 bits (55), Expect = 4.7
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = -1
Query: 98 VVVVNPNGAGAQPLYEVVGLV 36
VVV NG G+QPL V GLV
Sbjct: 195 VVVDCANGVGSQPLKTVAGLV 215
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,522,014
Number of Sequences: 5004
Number of extensions: 44360
Number of successful extensions: 102
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -