Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30914
         (657 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr 1||...    27   1.8  
SPCC24B10.21 |tpi1|tpi|triosephosphate isomerase|Schizosaccharom...    26   4.2  
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|...    26   4.2  
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe...    26   5.5  
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ...    26   5.5  
SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac...    25   7.3  
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    25   7.3  
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe...    25   7.3  
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    25   9.6  
SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc...    25   9.6  
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz...    25   9.6  
SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   9.6  
SPAC1687.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.6  

>SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 467

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
 Frame = +3

Query: 216 CTFGDQTGAWRLRVGSTWANSGGVVHQLNRIIHHPNYNRQTADSDLCILRSNTNIVLNNN 395
           C  G ++  + + +  ++  S  + H +     HPNY+ +  +S+   L   T I +N N
Sbjct: 315 CELGKESSLFSISMVKSFLVSADMAHAM-----HPNYSSRYENSNTPFLNKGTVIKVNAN 369

Query: 396 VR-PVNIAG 419
            R   N AG
Sbjct: 370 QRYTTNSAG 378


>SPCC24B10.21 |tpi1|tpi|triosephosphate
           isomerase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 249

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +3

Query: 444 QPVWAAGWGATSLGGSGSEQLRHVQVWTINQ 536
           +PVWA G G T+      E    ++ W  N+
Sbjct: 165 EPVWAIGTGKTATPEQAQEVHAEIRKWATNK 195


>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 809

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 126 SLLFTRNWSQWWQACGG 176
           S+  T N+  WW +CGG
Sbjct: 110 SMCSTVNYPTWWDSCGG 126


>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 848

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 473 YFARRFWFGAASSRSGLDYQSEYLRPTL 556
           +F+ +FW   ASS   +DY +E+ +  L
Sbjct: 11  FFSCQFWHAFASSVLAIDYGTEWTKAAL 38


>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 761

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
 Frame = -2

Query: 167 SLPPLTPIPCKQQRNNTGVPV-NGGCRATNNPLGVCWNSCHSSQT 36
           S P   P+P +      G    N G  A N+    CWNS ++S +
Sbjct: 90  SSPGKLPVPSRNNSYLQGTAESNSGNFANNSISNNCWNSAYNSNS 134


>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
           Alg6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 506

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = +2

Query: 464 LGCYFARRFWFGAASSRSGLDYQSEYLRPTLQTH*PFYHR*HVV--LWCFGRWWSRPVP 634
           +G YF    WF   +SR    ++S  L+  +++     H   +V  L  + +WWSR +P
Sbjct: 103 IGHYFFNPEWFADVTSRG---FESLELKLFMRSTVIASHLLILVPPLMFYSKWWSRRIP 158


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = -1

Query: 261 NQHEDAMHPFDHRMCNEQRKEQISG*EGFHRKPATTDSNSL 139
           ++H   ++P D     ++ KE+ S     HR+ +T D+ +L
Sbjct: 444 SEHSPNINPLDEAAVEDEVKEEKSRFHLGHRRSSTADNGTL 484


>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 488

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 27/108 (25%), Positives = 41/108 (37%), Gaps = 13/108 (12%)
 Frame = +3

Query: 240 AWRLRVGSTWANSGGVVHQLNRIIHHPNYNRQTADSDLCIL--RS---------NTNIVL 386
           +W   V S+ + SG + H   RI +H     Q   S++C L  RS         N N+V 
Sbjct: 270 SWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQ 329

Query: 387 NNNVRP--VNIAGSNYNLADNQPVWAAGWGATSLGGSGSEQLRHVQVW 524
             + R        +N+N A     W   W +  L   G    + +  W
Sbjct: 330 IWDARSSIPKFTKTNHNAAVKAVAWCP-WQSNLLATGGGTMDKQIHFW 376


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -2

Query: 227 TECAMSSGKNRSLVKKVSTASLPPLTPIPCKQQRNNTGVPVN 102
           TE   S   N+SL  ++ +   PPL+P    + R  +  P N
Sbjct: 156 TETKSSVESNKSLSIEIMSPQKPPLSPFGGSRDRLVSETPTN 197


>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 919

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 649 PPESPWHWSRPPTSKTPEHNMLAVIERL 566
           PP+ P H + P     P+ ++ A+IE L
Sbjct: 22  PPQQPAHAAAPAQDDEPDDDIDALIEEL 49


>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
           Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +3

Query: 318 PNYNRQTADSDLCIL 362
           P Y +QT DS++C+L
Sbjct: 402 PTYAKQTIDSNICVL 416


>SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 231

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +3

Query: 279 GGVVHQLNRIIHHPNYNRQTADSDLCILRSNTNIVLNNNVRP 404
           GG V   NRII H         + LC+  S  N++ N   +P
Sbjct: 190 GGSVGLSNRIITHRELEMVILSTSLCVQLSLLNLLPNYFPKP 231


>SPAC1687.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 96

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = -3

Query: 163 CHH*LQFLVNNRETIPGYRSMVVVEPPIILWGFV 62
           C H LQ++ N+R++  G +  +V E  + ++  V
Sbjct: 23  CDHLLQYISNSRDSKAGLKIFLVFELAVTIFNTV 56


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,972,998
Number of Sequences: 5004
Number of extensions: 65773
Number of successful extensions: 193
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)