Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30912
         (657 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy...    29   0.78 
SPBPB2B2.17c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       28   1.4  
SPBC21D10.11c |nfs1||iron-sulfur cluster assembly protein Nfs1|S...    28   1.4  
SPAC977.02 |||S. pombe specific 5Tm protein family|Schizosacchar...    28   1.4  
SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual        28   1.4  
SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        28   1.4  
SPAC1A6.09c |lag1||sphingosine N-acyltransferase Lag1|Schizosacc...    26   4.2  
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|...    25   9.6  

>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 28.7 bits (61), Expect = 0.78
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +2

Query: 32  PPRHVASPQETLSIPSTSRP 91
           PPR +  PQ++ ++P TS+P
Sbjct: 937 PPRQLIPPQQSTNVPGTSKP 956


>SPBPB2B2.17c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 146

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = +1

Query: 271 NKFY-RFMKSHLLNLVKVFFKCLIRVLF 351
           NKF+ RF+++H +N ++ F K  + +LF
Sbjct: 82  NKFFPRFIRTHSINSIRTFSKFQVIILF 109


>SPBC21D10.11c |nfs1||iron-sulfur cluster assembly protein
           Nfs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 498

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +1

Query: 208 PREISSQQFICISNNL*ISNTNKFYRFMKSHLLNLVKVFFKCLI 339
           PREI        SNN  +    +FY+  K HL++ V+   KC++
Sbjct: 160 PREIIFTSGATESNNAILKGVARFYKSRKKHLVS-VQTEHKCVL 202


>SPAC977.02 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = +1

Query: 271 NKFY-RFMKSHLLNLVKVFFKCLIRVLF 351
           NKF+ RF+++H +N ++ F K  + +LF
Sbjct: 82  NKFFPRFIRTHSINSIRTFSKFQVIILF 109


>SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 146

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = +1

Query: 271 NKFY-RFMKSHLLNLVKVFFKCLIRVLF 351
           NKF+ RF+++H +N ++ F K  + +LF
Sbjct: 82  NKFFPRFIRTHSINSIRTFSKFQVIILF 109


>SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = +1

Query: 271 NKFY-RFMKSHLLNLVKVFFKCLIRVLF 351
           NKF+ RF+++H +N ++ F K  + +LF
Sbjct: 82  NKFFPRFIRTHSINSIRTFSKFQVIILF 109


>SPAC1A6.09c |lag1||sphingosine N-acyltransferase
           Lag1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 482 YIYISQIYCKFIRVVFTNDIIIYI 411
           YI+   IY  FI ++FT  ++IYI
Sbjct: 328 YIFNKPIYIAFIILLFTLQLLIYI 351


>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 767

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +3

Query: 45  WPLHKKPCLFHLPADLNPL 101
           WPL      FHLP +L PL
Sbjct: 539 WPLSPNNVNFHLPEELVPL 557


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,628,038
Number of Sequences: 5004
Number of extensions: 52138
Number of successful extensions: 108
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)