Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30909
(707 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40800-9|AAA81494.1| 316|Caenorhabditis elegans Hypothetical pr... 88 5e-18
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 29 3.3
AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical ... 29 3.3
Z81123-2|CAB03365.1| 734|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z46829-1|CAA86862.1| 375|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z49072-2|CAB61017.2| 1006|Caenorhabditis elegans Hypothetical pr... 27 9.9
Z49072-1|CAA88884.1| 938|Caenorhabditis elegans Hypothetical pr... 27 9.9
AF031519-1|AAC78763.1| 930|Caenorhabditis elegans myotubularin ... 27 9.9
AC024803-1|AAL05589.4| 433|Caenorhabditis elegans Hypothetical ... 27 9.9
>U40800-9|AAA81494.1| 316|Caenorhabditis elegans Hypothetical
protein D2096.8 protein.
Length = 316
Score = 88.2 bits (209), Expect = 5e-18
Identities = 53/163 (32%), Positives = 78/163 (47%)
Frame = +2
Query: 203 EAMASLPPNVRRRIRALRTLQKEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVNGT 382
+ + +LP NV++R+ AL+ LQ + + IE+ FY VH R IV G
Sbjct: 17 DMIQALPLNVKQRVCALKNLQMKTIQIESDFYKRVHELEIEFEGKFKSTFDQRKAIVAGE 76
Query: 383 YEPNDDECLNPWRDDTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNVKGIPDFWYNI 562
EP ++ P + E ++LA KA E DP+ KGI DFW
Sbjct: 77 VEPTKEQIDTPILEGLEGDQLAELY--------------KAAEA--DPSAKGIKDFWLTA 120
Query: 563 FRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPISFTLEFYFA 691
R +++E ++EHD PIL L D+ +DP F +EF+FA
Sbjct: 121 LRTHDLVAEAIEEHDVPILSYLTDVTTAASKDPAGFKIEFHFA 163
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -2
Query: 316 ECMYFTVKLGLNVDKLLLKSSQGADSPTNI 227
EC++ + K GLNVDK+L +PT I
Sbjct: 188 ECLHISAKSGLNVDKVLEAIIDRVPAPTAI 217
>AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical
protein W09B6.1a protein.
Length = 2054
Score = 29.1 bits (62), Expect = 3.3
Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Frame = +2
Query: 431 EEEELARAVQNAAI---TEGEEKKDDKAIEPPMDPNVKGIPDFWYNIFRNVSMLSEMMQE 601
+EE+ QNA + T E++ + + N + +P IF V + + +
Sbjct: 1101 QEEQRVCYAQNAVVDMKTILEKEFRVNRVNTVLCLNDRPLPQL--TIFEQVRLEKDRLPA 1158
Query: 602 HDEPILKCLQDIKVQMHEDPIS 667
+ P+L L ++V H+DP S
Sbjct: 1159 NSYPVLSKLSTVRVSQHDDPTS 1180
>Z81123-2|CAB03365.1| 734|Caenorhabditis elegans Hypothetical
protein T14D7.2 protein.
Length = 734
Score = 28.7 bits (61), Expect = 4.3
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Frame = -2
Query: 439 FFFSVITPWVETFIIIRFICAIHNKSSLFIKRLVKFFI---FAFECMYFTVKLGLNVDKL 269
+ F +I P V T++++ F + + LFI V+ I FA C + LN+++L
Sbjct: 648 YLFHMI-PVVLTYMLVPFPIYFNTQIPLFIHCFVQLLITYFFAIICTMVSELPALNIERL 706
Query: 268 LLKS 257
LL S
Sbjct: 707 LLAS 710
>Z46829-1|CAA86862.1| 375|Caenorhabditis elegans Hypothetical
protein T14B1.1 protein.
Length = 375
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +2
Query: 410 NPWRDDTEEEELARAVQNAAITEGEEKKDDKAIEPPMD 523
+P RD+ EE LA+ ++ A GE+++ + EP D
Sbjct: 6 DPGRDEEVEEPLAKKIRVVAQEAGEDEESEMEKEPNAD 43
>Z49072-2|CAB61017.2| 1006|Caenorhabditis elegans Hypothetical
protein T24A11.1b protein.
Length = 1006
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +2
Query: 416 WRDDTEEEELARAVQNAAITEGEEKK 493
WR+ T+E+ + AV+ + I EGEEKK
Sbjct: 337 WRNPTDEKIIEEAVKASRI-EGEEKK 361
>Z49072-1|CAA88884.1| 938|Caenorhabditis elegans Hypothetical
protein T24A11.1a protein.
Length = 938
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +2
Query: 416 WRDDTEEEELARAVQNAAITEGEEKK 493
WR+ T+E+ + AV+ + I EGEEKK
Sbjct: 333 WRNPTDEKIIEEAVKASRI-EGEEKK 357
>AF031519-1|AAC78763.1| 930|Caenorhabditis elegans myotubularin
homologous protein 1 protein.
Length = 930
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +2
Query: 416 WRDDTEEEELARAVQNAAITEGEEKK 493
WR+ T+E+ + AV+ + I EGEEKK
Sbjct: 337 WRNPTDEKIIEEAVKASRI-EGEEKK 361
>AC024803-1|AAL05589.4| 433|Caenorhabditis elegans Hypothetical
protein Y51H7BM.1 protein.
Length = 433
Score = 27.5 bits (58), Expect = 9.9
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -1
Query: 563 ICCTKSLGYPLHW 525
+CC K LGYP +W
Sbjct: 52 LCCEKELGYPSNW 64
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,851,837
Number of Sequences: 27780
Number of extensions: 322338
Number of successful extensions: 1034
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1033
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -