Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30909
(707 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g26110.1 68417.m03759 nucleosome assembly protein (NAP), puta... 73 2e-13
At2g19480.1 68415.m02277 nucleosome assembly protein (NAP), puta... 72 4e-13
At5g56950.1 68418.m07109 nucleosome assembly protein (NAP), puta... 65 4e-11
At1g18800.1 68414.m02343 nucleosome assembly protein (NAP) famil... 40 0.001
At3g13782.1 68416.m01740 nucleosome assembly protein (NAP) famil... 40 0.002
At4g02220.1 68417.m00300 zinc finger (MYND type) family protein ... 32 0.32
At2g23170.1 68415.m02768 auxin-responsive GH3 family protein sim... 32 0.43
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 30 1.3
At4g03620.1 68417.m00497 myosin heavy chain-related contains wea... 30 1.7
At2g27470.1 68415.m03320 CCAAT-box binding transcription factor ... 29 3.0
At4g17020.2 68417.m02567 transcription factor-related contains w... 28 5.3
At4g17020.1 68417.m02568 transcription factor-related contains w... 28 5.3
At2g27810.2 68415.m03372 xanthine/uracil permease family protein... 28 5.3
At2g27810.1 68415.m03371 xanthine/uracil permease family protein... 28 5.3
At2g26530.1 68415.m03183 expressed protein 27 9.2
>At4g26110.1 68417.m03759 nucleosome assembly protein (NAP),
putative similar to nucleosome assembly protein 1
[Glycine max] GI:1161252; contains Pfam profile PF00956:
Nucleosome assembly protein (NAP)
Length = 372
Score = 72.5 bits (170), Expect = 2e-13
Identities = 55/163 (33%), Positives = 78/163 (47%)
Frame = +2
Query: 200 AEAMASLPPNVRRRIRALRTLQKEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVNG 379
++ + +L PNVR+R+ ALR +Q + ++EAKF E R IVNG
Sbjct: 41 SDVLENLTPNVRKRVDALRDIQSQHDELEAKFREERAILEAKYQTLYQPLYVKRYEIVNG 100
Query: 380 TYEPNDDECLNPWRDDTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNVKGIPDFWYN 559
T E L P DDT+ + +GEEK ++ KG+P FW
Sbjct: 101 TTEVE----LAP-EDDTK------------VDQGEEKTAEE----------KGVPSFWLT 133
Query: 560 IFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPISFTLEFYF 688
+N ++SE + E DE LK L+DIK E+P F LEF+F
Sbjct: 134 ALKNNDVISEEVTERDEGALKYLKDIKWCKIEEPKGFKLEFFF 176
>At2g19480.1 68415.m02277 nucleosome assembly protein (NAP),
putative similar to nucleosome assembly protein 1
[Glycine max] GI:1161252; contains Pfam profile PF00956:
Nucleosome assembly protein (NAP)
Length = 379
Score = 71.7 bits (168), Expect = 4e-13
Identities = 52/164 (31%), Positives = 76/164 (46%)
Frame = +2
Query: 197 HAEAMASLPPNVRRRIRALRTLQKEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVN 376
H++ + +L P VR+R+ LR +Q ++ ++EAKF+ E A R IVN
Sbjct: 40 HSDVLENLTPPVRKRVEFLREIQNQYDEMEAKFFEERAALEAKYQKLYQPLYTKRYEIVN 99
Query: 377 GTYEPNDDECLNPWRDDTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNVKGIPDFWY 556
G E V+ AA E+ +DK+ E KG+PDFW
Sbjct: 100 GVVE----------------------VEGAAEEVKSEQGEDKSAEE------KGVPDFWL 131
Query: 557 NIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPISFTLEFYF 688
+N + +E + E DE LK L+DIK E+P F LEF+F
Sbjct: 132 IALKNNEITAEEITERDEGALKYLKDIKWSRVEEPKGFKLEFFF 175
>At5g56950.1 68418.m07109 nucleosome assembly protein (NAP),
putative similar to nucleosome assembly protein 1
[Glycine max] GI:1161252; contains Pfam profile PF00956:
Nucleosome assembly protein (NAP)
Length = 374
Score = 65.3 bits (152), Expect = 4e-11
Identities = 49/164 (29%), Positives = 74/164 (45%)
Frame = +2
Query: 197 HAEAMASLPPNVRRRIRALRTLQKEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVN 376
H++ + +L P +RRR+ LR +Q + +IE KF E A R IVN
Sbjct: 40 HSDVLENLTPKIRRRVEVLREIQGKHDEIETKFREERAALEAKYQKLYQPLYNKRYEIVN 99
Query: 377 GTYEPNDDECLNPWRDDTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNVKGIPDFWY 556
G E+ A ++A + +G+EK ++ KG+P FW
Sbjct: 100 GA------------------TEVEGAPEDAKMDQGDEKTAEE----------KGVPSFWL 131
Query: 557 NIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPISFTLEFYF 688
+N ++SE + E DE L L+DIK E+P F LEF+F
Sbjct: 132 TALKNNDVISEEITERDEGALIYLKDIKWCKIEEPKGFKLEFFF 175
>At1g18800.1 68414.m02343 nucleosome assembly protein (NAP) family
protein similar to SP|Q01105|SET protein (HLA-DR
associated protein II) (PHAPII) (Phosphatase 2A
inhibitor I2PP2A) {Homo sapiens}; contains Pfam profile
PF00956: Nucleosome assembly protein (NAP)
Length = 256
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = +2
Query: 530 VKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPIS-FTLEFYFAP 694
+K IPDFW F + L E++ E D+ I K L + V+ +D S +++ F F P
Sbjct: 70 IKTIPDFWLTAFLSHPALGELLTEEDQKIFKYLSSLDVEDAKDVKSGYSITFSFNP 125
>At3g13782.1 68416.m01740 nucleosome assembly protein (NAP) family
protein similar to nucleosome assembly protein 1
[Glycine max] GI:1161252; contains Pfam profile PF00956:
Nucleosome assembly protein (NAP)
Length = 329
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +2
Query: 533 KGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPI-SFTLEFYF 688
+G+P+FW + ML+ + E DE LK L+DI+ ED +F LEF F
Sbjct: 126 EGVPNFWLIAMKTNEMLANEITERDEAALKYLKDIRSCRVEDTSRNFKLEFLF 178
>At4g02220.1 68417.m00300 zinc finger (MYND type) family protein /
programmed cell death 2 C-terminal domain-containing
protein similar to SP|Q16342 Programmed cell death
protein 2 (Zinc finger protein Rp-8) {Homo sapiens};
contains Pfam profiles PF01753: MYND finger, PF04194:
Programmed cell death protein 2, C-terminal putative
domain
Length = 418
Score = 32.3 bits (70), Expect = 0.32
Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Frame = +2
Query: 422 DDTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNVKGIPDFWYNIFRNVSMLSEMMQE 601
DD +++E A N + ++++DD+ EP M V+ W N+ + L+ +
Sbjct: 21 DDDDDDETAVEPINMDEFDDDDEEDDEDYEPVMLGFVESPKFAWSNLRQLFPNLAGGVPA 80
Query: 602 HDEPI-LKCLQDIKVQMHEDPISFTLEFYFAPM 697
+P+ L + I + E+P+ F L+ Y AP+
Sbjct: 81 WLDPVNLPSGKSILCDLCEEPMQFVLQLY-APL 112
>At2g23170.1 68415.m02768 auxin-responsive GH3 family protein
similar to auxin-responsive GH3 product [Glycine max]
GI:18591; contains Pfam profile PF03321: GH3
auxin-responsive promoter
Length = 595
Score = 31.9 bits (69), Expect = 0.43
Identities = 21/77 (27%), Positives = 39/77 (50%)
Frame = +2
Query: 422 DDTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNVKGIPDFWYNIFRNVSMLSEMMQE 601
D T+E EL AV+NA++ GE+ + IE K IP Y I+ + + +
Sbjct: 442 DKTDEAELQSAVENASLLLGEQ--GTRVIEYTSYAETKTIPGH-YVIYWELLVKDQTNPP 498
Query: 602 HDEPILKCLQDIKVQMH 652
+DE + +C +++ ++
Sbjct: 499 NDEVMARCCLEMEESLN 515
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +2
Query: 422 DDTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNVKGI 541
DD +EEE + + +I E EEK D +E P D N+K +
Sbjct: 43 DDDDEEEAVSELNSLSIKE-EEKPDS-ILEEPEDSNIKAV 80
>At4g03620.1 68417.m00497 myosin heavy chain-related contains weak
similarity to Swiss-Prot:P24733 myosin heavy chain,
striated muscle [Aequipecten irradians]
Length = 342
Score = 29.9 bits (64), Expect = 1.7
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +2
Query: 383 YEPND-DECLNPWRDDTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNV 532
+E N+ +E ++ +R + E+L + VQN A+ +EKK+D P D NV
Sbjct: 199 HELNEMEELVSDFR--AQNEKLLKKVQNCAVEHNKEKKEDIDGPGPGDNNV 247
>At2g27470.1 68415.m03320 CCAAT-box binding transcription factor
subunit HAP3-related contains Pfam PF00808 :
Histone-like transcription factor (CBF/NF-Y) and
archaeal histone; similar to polymerase epsilon p17
subunit (DNA polymerase epsilon subunit 3) (YB-like
protein 1) (YBL1) (NF-YB-like protein) (SP:Q9JKP7) [Mus
musculus];
Length = 275
Score = 29.1 bits (62), Expect = 3.0
Identities = 21/79 (26%), Positives = 35/79 (44%)
Frame = +2
Query: 374 NGTYEPNDDECLNPWRDDTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNVKGIPDFW 553
NG E NDDE N + +EE +N+ G E ++ + M+ N G+ +
Sbjct: 197 NGNDEENDDE--NTEENGNDEENEKEDEENSMEENGNESEESGNEDHSMEENGSGVGEDN 254
Query: 554 YNIFRNVSMLSEMMQEHDE 610
N +VS E ++ +E
Sbjct: 255 ENEDGSVSGSGEEVESDEE 273
>At4g17020.2 68417.m02567 transcription factor-related contains weak
similarity to Swiss-Prot:Q92759 TFIIH basal
transcription factor complex p52 subunit (Basic
transcription factor 52 kDa subunit, BTF2-p52, General
transcription factor IIH polypeptide 4) [Homo sapiens]
Length = 462
Score = 28.3 bits (60), Expect = 5.3
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +2
Query: 149 SGVTRNEMIAAITNRLH---AEAMASLPPNVRRRIRALRTLQKEFVDIEAKFYSE 304
+G+T +++I + H A+ + S+P NV +IR T + +A FY E
Sbjct: 349 NGITSDQIITFLQQNSHPRCADRVPSIPENVTDQIRLWETDLQRIEMTQAHFYDE 403
>At4g17020.1 68417.m02568 transcription factor-related contains weak
similarity to Swiss-Prot:Q92759 TFIIH basal
transcription factor complex p52 subunit (Basic
transcription factor 52 kDa subunit, BTF2-p52, General
transcription factor IIH polypeptide 4) [Homo sapiens]
Length = 452
Score = 28.3 bits (60), Expect = 5.3
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +2
Query: 149 SGVTRNEMIAAITNRLH---AEAMASLPPNVRRRIRALRTLQKEFVDIEAKFYSE 304
+G+T +++I + H A+ + S+P NV +IR T + +A FY E
Sbjct: 349 NGITSDQIITFLQQNSHPRCADRVPSIPENVTDQIRLWETDLQRIEMTQAHFYDE 403
>At2g27810.2 68415.m03372 xanthine/uracil permease family protein
contains Pfam profile: PF00860 permease family
Length = 660
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 461 NAAITEGEEKKDDKAIEPPMDPNVKGIP 544
+AA+T GE KD K PP P +P
Sbjct: 82 SAAVTNGETDKDKKEKPPPPPPGSVAVP 109
>At2g27810.1 68415.m03371 xanthine/uracil permease family protein
contains Pfam profile: PF00860 permease family
Length = 709
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 461 NAAITEGEEKKDDKAIEPPMDPNVKGIP 544
+AA+T GE KD K PP P +P
Sbjct: 82 SAAVTNGETDKDKKEKPPPPPPGSVAVP 109
>At2g26530.1 68415.m03183 expressed protein
Length = 317
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = +3
Query: 312 HSNANMKNFTSLFMKSEXXXXXXXXXXXXXNVSTHGVMTLKKKS 443
H+ ++K FTSLF K E +VS H + KK+
Sbjct: 253 HNKDSVKTFTSLFRKQEDTKNSSSRGRGSSSVSAHEFHYMSKKA 296
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,824,317
Number of Sequences: 28952
Number of extensions: 293661
Number of successful extensions: 878
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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