Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30907
         (666 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    31   0.15 
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|...    28   1.1  
SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   1.4  
SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c...    26   4.2  
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce...    25   7.4  
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E...    25   9.8  
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit...    25   9.8  

>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 31.1 bits (67), Expect = 0.15
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = +1

Query: 286 NNHCLLKIKIHLHRYFETLMEDLKSYYYT*NRKKDLPLLSQIVDVL 423
           NN C  ++  +L +    L E  K + Y   R K LPLL  ++DVL
Sbjct: 717 NNDCKSQLNAYLMQMRTGLSEKAKDHVYV--RSKTLPLLKCVIDVL 760


>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 623

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
 Frame = +1

Query: 298 LLKIKIHLHRYFETLMEDLKSYYYT*NRKKDLPLLSQIVDVL*YTNDE-----GANTSIT 462
           LLK+K+     F    +D +S ++  +R++  PL+  I D   Y N E      A+ S++
Sbjct: 417 LLKLKVKNGPAFGLFNQDFESIFHRLSRQQPTPLIGAIAD---YGNPESCIGKAAHKSVS 473

Query: 463 VTNNDFNFRLITRLS 507
             N+D     +  LS
Sbjct: 474 CANDDEVVSAVVSLS 488


>SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 103

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 14  FSTHIYIYIEFVTVLCGNKIFNFI 85
           FS +IYIY  F + LC   +F +I
Sbjct: 77  FSIYIYIYFFFYSFLCSPYLFKYI 100


>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 716

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 10/23 (43%), Positives = 17/23 (73%), Gaps = 2/23 (8%)
 Frame = +1

Query: 292 HCL--LKIKIHLHRYFETLMEDL 354
           HCL  + +++HLHR+ E + E+L
Sbjct: 619 HCLSNVSLQLHLHRFHELVSENL 641


>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 297

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +3

Query: 321 TPIFRNINGR-FKIILLYVEQKKRSTVAKPNRGRALIYERRR 443
           T    N+N + F   +L V++ KRS    P  G+ + Y+RRR
Sbjct: 156 TSAIDNLNSQEFYGRVLNVQKAKRSRPHSPTPGKYMGYDRRR 197


>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
           EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 439

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +1

Query: 340 LMEDLKSYYYT*NRKKDLPLLSQIVDV 420
           LME + SY     RK D+P L  I DV
Sbjct: 234 LMEAVDSYITLPERKTDVPFLMAIEDV 260


>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
           factor complex subunit Rna14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 733

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 287 LSVRLGADCSIPCYVHSNRSKD 222
           LSVRL      P +VH+NR  D
Sbjct: 610 LSVRLNGGNGFPGHVHNNREDD 631


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,609,385
Number of Sequences: 5004
Number of extensions: 52961
Number of successful extensions: 122
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)