Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30907
         (666 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    26   0.37 
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    24   1.5  
AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    22   6.0  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    22   6.0  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   8.0  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -3

Query: 451  YWHLRRSYIKARPRFGLATVDLFFCSTYNNMIL 353
            +WH R + IK RP      V LFF     N+ L
Sbjct: 983  FWHHRLAEIKRRPDLEYGKVWLFFGCRQRNLDL 1015



 Score = 23.8 bits (49), Expect = 1.5
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 123 FSLKLIHRALLAHMKLKILFPHSTVTNSM 37
           F+ KL  RAL   +K  +LF   T T+ M
Sbjct: 455 FTSKLFGRALSRRIKATVLFATETGTSQM 483


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = -2

Query: 227 KDLAGRNVESCFSLAVKQSK-PAVLNVLGSVT 135
           + L  +N E CFSL  K  K P  L  +  VT
Sbjct: 535 RTLGNQNSEMCFSLKFKNKKLPVFLAEIWDVT 566


>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 178 NNPSLLCLMFLAV*RFDLLFAEIN 107
           N PS+ C M+  +  F L+  E N
Sbjct: 66  NEPSITCYMYCLLEAFSLVDDEAN 89


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 178 NNPSLLCLMFLAV*RFDLLFAEIN 107
           N PS+ C M+  +  F L+  E N
Sbjct: 66  NEPSITCYMYCLLEAFSLVDDEAN 89


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 14/62 (22%), Positives = 23/62 (37%)
 Frame = +3

Query: 69  KFLISYELTVLYGLISAKSKSNRYTAKNIKHSRLGLFHRETETRLHITPSQIFASI*VNI 248
           +F   +  TV+Y  +  K+          KHS          ++L I    +F  I +N 
Sbjct: 725 RFAAGFCFTVVYAALLTKTNRISRIFNASKHSAKRPSFISPRSQLIICSGLVFVQILING 784

Query: 249 TW 254
            W
Sbjct: 785 VW 786


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,136
Number of Sequences: 438
Number of extensions: 3546
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)