Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30905
(749 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical ... 73 3e-13
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans... 57 2e-08
AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical ... 57 2e-08
U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical pr... 52 4e-07
AF016663-5|AAC70880.1| 864|Caenorhabditis elegans Hypothetical ... 33 0.29
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr... 31 0.66
Z81034-4|CAB02729.1| 541|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z70307-7|CAA94336.2| 531|Caenorhabditis elegans Hypothetical pr... 30 2.0
AC024859-11|AAK29981.1| 933|Caenorhabditis elegans Hypothetical... 28 8.1
AC024859-10|ABA00158.1| 832|Caenorhabditis elegans Hypothetical... 28 8.1
>AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical
protein R11E3.3 protein.
Length = 931
Score = 72.5 bits (170), Expect = 3e-13
Identities = 46/142 (32%), Positives = 69/142 (48%)
Frame = +1
Query: 316 VTPMEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWKEA 495
+T +E+ ++ + P A G DGI+ I+ LP+ LA ++N +++ I P WK+A
Sbjct: 328 ITSIELHNMAIKMSPSAAIGPDGIAQIHIRKLPMCGYSFLAYLYNVSLSTNIIPDKWKKA 387
Query: 496 DVIGIHKPGKPKNHPTSYRPISLLMSXXXXXXXXXXXXXXDFVSSKGILIDEQFGFRTNH 675
+VI I KP K +SYRPISLL + + S Q GF+ H
Sbjct: 388 NVIMIPKPKKDPAIASSYRPISLLSPIAKLLEKAILKRIKNSIESPA----HQHGFKPEH 443
Query: 676 SCVQQVHRLTEHILVGLNRPKP 741
S V ++T I+ GLN P
Sbjct: 444 STTTAVIQVTNDIIGGLNMKNP 465
>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
transcriptase protein.
Length = 1066
Score = 56.8 bits (131), Expect = 2e-08
Identities = 46/174 (26%), Positives = 73/174 (41%), Gaps = 2/174 (1%)
Frame = +1
Query: 229 QSVDPVHVELVDSEVE--RRASLPPSDALPPVTPMEVKDLIKDLRPRKAPGSDGISNRVI 402
Q ++ + EL S V + +S+P + PP P E++ +++ KA G D IS +
Sbjct: 516 QEIEKFYTELFKSAVSNSQTSSIPATATPPPFLPEEIRHVLRSFPNGKAAGQDKISADFL 575
Query: 403 KLLPVQLIVMLASIFNAAMANCIFPAVWKEADVIGIHKPGKPKNHPTSYRPISLLMSXXX 582
K +I ++ FN + + P WK + I K G +N +YRPI LL
Sbjct: 576 KSCHDNVIDLITDRFNRYLHSRNVPKPWKTSKTTLIFKKGDREN-LENYRPICLLPVLYK 634
Query: 583 XXXXXXXXXXXDFVSSKGILIDEQFGFRTNHSCVQQVHRLTEHILVGLNRPKPL 744
+ + EQ GFR + S + +H L + VG PL
Sbjct: 635 VFTKCLLNRMRRSLDEAQPV--EQAGFRRSFSTIDHIHSLQRLLEVGREYQIPL 686
>AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical
protein K10F12.5 protein.
Length = 805
Score = 56.8 bits (131), Expect = 2e-08
Identities = 46/174 (26%), Positives = 73/174 (41%), Gaps = 2/174 (1%)
Frame = +1
Query: 229 QSVDPVHVELVDSEVE--RRASLPPSDALPPVTPMEVKDLIKDLRPRKAPGSDGISNRVI 402
Q ++ + EL S V + +S+P + PP P E++ +++ KA G D IS +
Sbjct: 255 QEIEKFYTELFKSAVSNSQTSSIPATATPPPFLPEEIRHVLRSFPNGKAAGQDKISADFL 314
Query: 403 KLLPVQLIVMLASIFNAAMANCIFPAVWKEADVIGIHKPGKPKNHPTSYRPISLLMSXXX 582
K +I ++ FN + + P WK + I K G +N +YRPI LL
Sbjct: 315 KSCHDNVIDLITDRFNRYLHSRNVPKPWKTSKTTLIFKKGDREN-LENYRPICLLPVLYK 373
Query: 583 XXXXXXXXXXXDFVSSKGILIDEQFGFRTNHSCVQQVHRLTEHILVGLNRPKPL 744
+ + EQ GFR + S + +H L + VG PL
Sbjct: 374 VFTKCLLNRMRRSLDEAQPV--EQAGFRRSFSTIDHIHSLQRLLEVGREYQIPL 425
>U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical
protein F20B4.7 protein.
Length = 891
Score = 52.0 bits (119), Expect = 4e-07
Identities = 44/174 (25%), Positives = 71/174 (40%), Gaps = 2/174 (1%)
Frame = +1
Query: 229 QSVDPVHVELVDSEVE--RRASLPPSDALPPVTPMEVKDLIKDLRPRKAPGSDGISNRVI 402
Q ++ + E S V + +S+P + PP P +++ ++ KA G D IS +
Sbjct: 345 QEIEKFYTEFFKSAVSNSQASSIPTTATPPPFLPEKIRYALRSFPNGKAAGQDKISADFL 404
Query: 403 KLLPVQLIVMLASIFNAAMANCIFPAVWKEADVIGIHKPGKPKNHPTSYRPISLLMSXXX 582
K +I ++ FN + + P WK + I K G +N +YRPI LL
Sbjct: 405 KSCHDNVIDLITDRFNRYLHSRNVPKPWKTSKTTLIFKKGDREN-LENYRPICLLPVLYK 463
Query: 583 XXXXXXXXXXXDFVSSKGILIDEQFGFRTNHSCVQQVHRLTEHILVGLNRPKPL 744
+ + EQ GFR + S + +H L + VG PL
Sbjct: 464 VFTKCLLNRMRRSLDEAQPV--EQAGFRRSFSTIDHIHSLQRLLEVGREYQIPL 515
>AF016663-5|AAC70880.1| 864|Caenorhabditis elegans Hypothetical
protein F21E9.5 protein.
Length = 864
Score = 32.7 bits (71), Expect = 0.29
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Frame = +1
Query: 292 PP--SDALPPVTPMEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMAN 465
PP ++ LPP E++ I KA GSD I+ +K +I ++ FN + +
Sbjct: 386 PPIMAEPLPPFLFGEIRAAINSFPNGKAAGSDKITADFLKSCGDYVIRLITGRFNRYLES 445
Query: 466 CIFPAVWKEADVIGIHKPG 522
P WK + I K G
Sbjct: 446 GNIPKDWKTSKTTLIFKKG 464
>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical
protein C41A3.1 protein.
Length = 7829
Score = 31.5 bits (68), Expect = 0.66
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Frame = +1
Query: 133 LVGPSGRLAAFDDDEKAELLADTLQTQCTPSTQSVDP----VHVELVDSEVERRASLPPS 300
+V P+GRLAAFD + A++ S Q + +H E V S P
Sbjct: 202 MVSPNGRLAAFDRSANGFVRAESFAVAVLCSKQFAEENNLLIHCECVGSAFNSDGKTPSL 261
Query: 301 DALPPVTPMEVK 336
A P++ EV+
Sbjct: 262 TAPNPISQYEVQ 273
>Z81034-4|CAB02729.1| 541|Caenorhabditis elegans Hypothetical
protein C15C6.3 protein.
Length = 541
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Frame = +1
Query: 166 DDDEKAELLADTLQTQCTP---STQSVDPVHVELVDSEVERRASLPPSDALPP 315
D+DE AE +A +P S++S P + VD +E + PP PP
Sbjct: 431 DEDEPAEPIAQKAAAPVSPNPASSRSASPEPAQQVDELLESEEAAPPPPPPPP 483
>Z70307-7|CAA94336.2| 531|Caenorhabditis elegans Hypothetical
protein C39E9.7 protein.
Length = 531
Score = 29.9 bits (64), Expect = 2.0
Identities = 22/68 (32%), Positives = 28/68 (41%)
Frame = +2
Query: 449 MPLWRTVSFPRCGKKRTLSAYINPVNQKIIRRATARLASSCL*ANCMSVCSTNASETSSH 628
M + T++F CG + NPVN K I LASS L + N S H
Sbjct: 385 MRFFNTIAFGTCGIFLFTLGFFNPVNHKYIVTVMYILASSLLGCSYAGHLRMNQLR-SGH 443
Query: 629 PRAFLSMN 652
FL +N
Sbjct: 444 LHLFLLVN 451
>AC024859-11|AAK29981.1| 933|Caenorhabditis elegans Hypothetical
protein Y71H2AM.15a protein.
Length = 933
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/29 (34%), Positives = 21/29 (72%)
Frame = +1
Query: 310 PPVTPMEVKDLIKDLRPRKAPGSDGISNR 396
PP P ++++LI+D+ R +PG + +++R
Sbjct: 873 PPELPDQLRNLIEDVARRASPGPEQMNDR 901
>AC024859-10|ABA00158.1| 832|Caenorhabditis elegans Hypothetical
protein Y71H2AM.15b protein.
Length = 832
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/29 (34%), Positives = 21/29 (72%)
Frame = +1
Query: 310 PPVTPMEVKDLIKDLRPRKAPGSDGISNR 396
PP P ++++LI+D+ R +PG + +++R
Sbjct: 772 PPELPDQLRNLIEDVARRASPGPEQMNDR 800
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,400,838
Number of Sequences: 27780
Number of extensions: 367602
Number of successful extensions: 946
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 945
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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