Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30902
         (696 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    88   7e-20
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    25   0.52 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   2.8  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    23   3.7  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    22   4.8  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           22   4.8  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   6.4  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   8.5  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 88.2 bits (209), Expect = 7e-20
 Identities = 55/193 (28%), Positives = 103/193 (53%), Gaps = 9/193 (4%)
 Frame = +1

Query: 124 ESWKGKIVLITGAASGIGEGVVRLILERGVKHVAILDVAEDSGRALENELNTKYGPNSVK 303
           ++W  ++ L+TGA SGIG+ ++  ++ +G+K + I     D  + L  EL +K  P  + 
Sbjct: 3   QNWIDEVALVTGANSGIGKCLIECLVGKGMKVIGIAPQV-DKMKTLVEELKSK--PGKLV 59

Query: 304 FYKCDVTDEELFLELFDTVKNEQGYLDVVINNAAI------MNDSYKSYKKQIDINVTAL 465
             +CD++++   L++ + V+   G +D++INNA I       ND    +KK  DIN+  L
Sbjct: 60  PLQCDLSNQNDILKVIEWVEKNLGAIDILINNATINIDVTLQNDEVLDWKKIFDINLLGL 119

Query: 466 VTGTLKAIEIMGKQNGGKGGTVLNI---SSVAALCQSHMFPIYFGTKSAVLQFSNCIGLE 636
                + +++M K+ G   G ++NI   S +  L  +   P Y  +K A+   ++C+  E
Sbjct: 120 TCMIQEVLKLM-KKKGINNGIIVNINDASGLNLLPMNRNRPAYLASKCALTTLTDCLRSE 178

Query: 637 EHYAKSGVRVLSI 675
               +S ++V+SI
Sbjct: 179 LAQCESNIKVISI 191


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 15/64 (23%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = +1

Query: 268 ELNTKYGPNSVKFYKCDVTDEELFLELFDTVKNEQGYLDVVINNAAIMNDS-YKSYKKQI 444
           E   K   N  ++ K   T +E F +  +  ++++  +   ++N  I N++ YK+Y K++
Sbjct: 277 EREQKSYKNEREYRKYRETSKERFRDRRERERSKESKIISSLSNKTIHNNNNYKNYNKKL 336

Query: 445 DINV 456
             N+
Sbjct: 337 YYNI 340


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 463 LVTGTLKAIEIMGKQNGGKGGTVLNISSVAAL 558
           +VTG      ++G  NGG GG +   S ++A+
Sbjct: 30  VVTGASGGSIVVGANNGGGGGGLGIASGLSAM 61


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -2

Query: 542 DIFRTVPPLPPFCFPIISIAFSVPVTKAVTF 450
           + F+  PPL  F    +    +V V KAVTF
Sbjct: 413 EAFQEFPPLGRFAVRDMRQTVAVGVIKAVTF 443


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = -1

Query: 261 ESSSRILGNIQNSNMLDTSLQYKPDHSFADTACGTSDKH 145
           E ++R+   +    +      YK  HS ++   GTS+K+
Sbjct: 422 EKAARMQAKVNRQPVWFYYYTYKGAHSISEIMSGTSNKY 460


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = -1

Query: 261 ESSSRILGNIQNSNMLDTSLQYKPDHSFADTACGTSDKH 145
           E ++R+   +    +      YK  HS ++   GTS+K+
Sbjct: 422 EKAARMQAKVNRQPVWFYYYTYKGAHSISEIMSGTSNKY 460


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = +2

Query: 197 YWSEVSSMLLFWMLPRIL 250
           +WS + S +L W + +I+
Sbjct: 395 FWSFIVSTILLWFINKII 412


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 542 DIFRTVPPLPPFCFPIISIAFSVPVTKAVTF 450
           + F+  PPL  F    +    +V V K+VTF
Sbjct: 413 EAFQEFPPLGRFAVRDMRQTVAVGVIKSVTF 443


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,890
Number of Sequences: 438
Number of extensions: 4465
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)