Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30901
         (714 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       32   0.005
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    23   3.8  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    23   3.8  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   6.6  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   6.6  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 32.3 bits (70), Expect = 0.005
 Identities = 19/43 (44%), Positives = 24/43 (55%)
 Frame = -3

Query: 169 SVYI*QAGLANHTISNNSYLQSASSLPMVRAATSDKPISPQNS 41
           S Y+ Q GL     + +S LQ    LPM ++ TSD P S QNS
Sbjct: 195 SQYLLQQGLGLQGHNPSSGLQPGEGLPMWKSDTSDGPESHQNS 237


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +1

Query: 73  SRHAPWVTTKQIEDNCCWRWYGWQDLL 153
           ++H P  T+  +ED       GW +LL
Sbjct: 249 AKHIPHFTSLPLEDQVLLLRAGWNELL 275


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +1

Query: 73  SRHAPWVTTKQIEDNCCWRWYGWQDLL 153
           ++H P  T+  +ED       GW +LL
Sbjct: 249 AKHIPHFTSLPLEDQVLLLRAGWNELL 275


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +1

Query: 85  PWVTTKQIEDNCCW 126
           P +  KQ  D CCW
Sbjct: 455 PGMIKKQQGDTCCW 468


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +1

Query: 85  PWVTTKQIEDNCCW 126
           P +  KQ  D CCW
Sbjct: 545 PGMIKKQQGDTCCW 558


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,548
Number of Sequences: 438
Number of extensions: 4322
Number of successful extensions: 19
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)