Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30895
         (824 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0239 - 1785699-1785980,1786061-1786284,1786380-1786526,178...    28   7.8  

>05_01_0239 -
           1785699-1785980,1786061-1786284,1786380-1786526,
           1786667-1786775,1786880-1786981,1787090-1787164,
           1787277-1787453,1787534-1787623,1787717-1787844,
           1787909-1788356
          Length = 593

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -1

Query: 440 P*SGRVLFVYFIKVFYLGSQITSYFSHAGVRPSLTALYRASVG 312
           P S   +FV F      G+ +T++  H GVRPS+   +  S G
Sbjct: 398 PASLAYVFVCFNVALAPGALMTTFLIHQGVRPSVIGAFGGSSG 440


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,652,863
Number of Sequences: 37544
Number of extensions: 328604
Number of successful extensions: 490
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)