Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30894
         (749 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    27   0.16 
EF222290-1|ABN79650.1|  378|Tribolium castaneum adipokinetic hor...    21   8.0  
DQ422965-1|ABE02225.1|  378|Tribolium castaneum adipokinetic hor...    21   8.0  

>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 27.1 bits (57), Expect = 0.16
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -3

Query: 450 LKAGLNPDSEPFISYSSSC 394
           L AG NPDSE F  + S+C
Sbjct: 6   LTAGCNPDSELFPGFGSTC 24


>EF222290-1|ABN79650.1|  378|Tribolium castaneum adipokinetic
           hormone receptor protein.
          Length = 378

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -3

Query: 393 FSLDK*KFLLLCISDRIIFQCLNVEYVNKQTRRIRKLSLG 274
           F L    F+L+CIS    +  L   Y+    RR + + LG
Sbjct: 135 FGLYLSSFILVCISVDRFYAVLKPLYLRALDRRDKFMLLG 174


>DQ422965-1|ABE02225.1|  378|Tribolium castaneum adipokinetic
           hormone receptor protein.
          Length = 378

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -3

Query: 393 FSLDK*KFLLLCISDRIIFQCLNVEYVNKQTRRIRKLSLG 274
           F L    F+L+CIS    +  L   Y+    RR + + LG
Sbjct: 135 FGLYLSSFILVCISVDRFYAVLKPLYLRALDRRDKFMLLG 174


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,148
Number of Sequences: 336
Number of extensions: 2951
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)