Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30894
         (749 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    26   6.6  
SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit Sen2|Sc...    26   6.6  

>SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 526

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = +2

Query: 350 SEIHKSKNFYLSKEKQLEEYEMNGSESGFNPAFNIATIKQVVN 478
           +E+H   N  +S EK +  +   G++       N++ ++ VVN
Sbjct: 215 NELHFKNNGVISVEKSISHFPQLGTQLARVELKNLSNVRNVVN 257


>SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit
           Sen2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = +3

Query: 78  YKKL*LFLNS--VILILN*VKNMSEFNQRWHEI 170
           YKK  +F ++   IL++  V N  ++N +WHE+
Sbjct: 281 YKKGPVFSHAEFAILLIPCVGNKQKYNMQWHEV 313


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,676,244
Number of Sequences: 5004
Number of extensions: 49475
Number of successful extensions: 83
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)