Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30893
         (738 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    27   3.7  
SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1 |Sc...    26   4.9  

>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1283

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -1

Query: 261 NSCSFIKILPVIDSIHCLISF*SEKSKLS*YSQIHTLMYSLFTFTY 124
           NS S    LP+ D+I+         +  +  +Q HTL+YS +T TY
Sbjct: 128 NSYSNTNSLPITDTINGTTELIIPTTSYN--NQSHTLIYSTYTSTY 171


>SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 215

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +3

Query: 546 FNIRYFFSNNEIHQLLYLTLH 608
           + + YFF N  + ++LYL+LH
Sbjct: 153 WGMSYFFFNKNMKRMLYLSLH 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,901,826
Number of Sequences: 5004
Number of extensions: 58435
Number of successful extensions: 80
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)