Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30890
         (702 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.06 |||tRNA specific adenosine deaminase |Schizosaccharo...    26   4.5  
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S...    26   4.5  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    26   6.0  

>SPBC16A3.06 |||tRNA specific adenosine deaminase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/47 (23%), Positives = 26/47 (55%)
 Frame = +1

Query: 187 LRCSNQCITCILHCISHRHM*TERWLANIELHHEYSIHTECLIFFFI 327
           LRC N+ +  + HCI  +    + WL  +  + ++++++  LI  ++
Sbjct: 95  LRCFNRLL--LEHCILIKESKKDTWLLEVADNGKFTLNSNLLIHLYV 139


>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
           Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 8/31 (25%), Positives = 19/31 (61%)
 Frame = -1

Query: 408 VVQIPRAASNIFNEIYTEEVFTKNFHHDEEE 316
           + Q+ R   +++N++  EE+  +  H+D +E
Sbjct: 445 IQQLERRNEDMYNKLLAEEIIRRKLHNDIQE 475


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 4   LSLSWIELHMVCEFYYNRLS 63
           L+LS + LH  CE  YNR S
Sbjct: 442 LNLSQVSLHQACEPEYNRSS 461


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,671,148
Number of Sequences: 5004
Number of extensions: 51462
Number of successful extensions: 118
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)