Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30890
         (702 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55360| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.90 
SB_42413| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_19688| Best HMM Match : 7tm_1 (HMM E-Value=5.9e-22)                 28   6.4  
SB_4636| Best HMM Match : FGGY_N (HMM E-Value=7.3e-06)                 28   6.4  
SB_5567| Best HMM Match : Ion_trans_2 (HMM E-Value=4.9e-09)            28   8.4  

>SB_55360| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1646

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 22/91 (24%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
 Frame = -2

Query: 551 YKSLKQVTEQQVQNNL*RLWPNRQSRRSHCPKDKALGVLLVSSDATMP*YKSLEQLPIFL 372
           Y+  ++V   +V+N    L PN+ S   +C     + V+    +   P Y+ + ++ + L
Sbjct: 235 YEKKRKVIWDEVRN-FSILVPNKIS---NCLNRVKIAVIGFDQEMPRPKYRLMGKIELHL 290

Query: 371 MRYIQKKCSQKTFITMKKKIKHS--VCIEYS 285
            + I+K+ + +TF    K+ KHS  + +E++
Sbjct: 291 HKIIKKQWTMETFEMQNKETKHSGDISVEFA 321


>SB_42413| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 639

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +1

Query: 280 HHEYSIHTECLIFFFIVMKVFCEHFFCIYLIK 375
           H    IHT   ++ F+ + + C+++FC  L K
Sbjct: 47  HGAVIIHTFICLYCFVALAILCDNYFCASLEK 78


>SB_19688| Best HMM Match : 7tm_1 (HMM E-Value=5.9e-22)
          Length = 309

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 16/50 (32%), Positives = 28/50 (56%)
 Frame = -2

Query: 668 SRMIDASTSYFFMYIINQTYGKSVLLLIKNTLRKLIILKYKSLKQVTEQQ 519
           +R+ +  +   F YIIN ++G SVL L+  T  + + +  + LK  T+ Q
Sbjct: 73  NRLFEHFSCKMFYYIINTSHGASVLNLLLLTYSRYMAVT-RPLKAYTQSQ 121


>SB_4636| Best HMM Match : FGGY_N (HMM E-Value=7.3e-06)
          Length = 512

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +1

Query: 55  RLSGLGVH*GQTL*HEIYIY*DR-LPEFKDSK*MSNHNEACSWS 183
           +L  + V  G  + HE  ++ D  LPEFK    +  HN+ C+++
Sbjct: 15  QLKAIAVDNGLNVTHEASVHFDSDLPEFKTDGGVHKHNDGCTFT 58


>SB_5567| Best HMM Match : Ion_trans_2 (HMM E-Value=4.9e-09)
          Length = 348

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 9/56 (16%), Positives = 28/56 (50%)
 Frame = +2

Query: 263 WLTLSSIMNTQYIPXXXXXXXXXXKFFVNTSSVYISLKILEAALGICTTALSHRLK 430
           ++T ++I     +P            ++NT+ +Y+ L ++   + +C T ++ +++
Sbjct: 206 FITFTTIGFGDVVPKSRALTLIFQGIWINTTLLYVGLSVVSITINLCATGVARQMQ 261


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,257,204
Number of Sequences: 59808
Number of extensions: 356267
Number of successful extensions: 667
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)