Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30890
         (702 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69790-3|CAD56579.1| 1234|Caenorhabditis elegans Hypothetical pr...    28   5.6  
Z69790-2|CAA93653.2| 1271|Caenorhabditis elegans Hypothetical pr...    28   5.6  
AL110487-4|CAB54427.1|  505|Caenorhabditis elegans Hypothetical ...    28   5.6  
AF339882-1|AAK14396.1| 1329|Caenorhabditis elegans attractin pro...    28   5.6  
AF039043-9|AAB94196.1|  427|Caenorhabditis elegans Tetraspanin f...    28   7.4  
AF039043-8|AAL02514.1|  451|Caenorhabditis elegans Tetraspanin f...    28   7.4  
Z70780-6|CAA94823.1|  614|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>Z69790-3|CAD56579.1| 1234|Caenorhabditis elegans Hypothetical protein
            F33C8.1b protein.
          Length = 1234

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = -1

Query: 423  RCDNAVVQIPRAASNIFNEIYTEEVFTKNFHHDEEENQTLGMY 295
            +C+   V  PR  +  F E+  + +FT     D+++N T  +Y
Sbjct: 993  KCEAKYVGNPRNGTPCFYELAVDFIFTFKLRSDDKDNHTSEIY 1035


>Z69790-2|CAA93653.2| 1271|Caenorhabditis elegans Hypothetical protein
            F33C8.1a protein.
          Length = 1271

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = -1

Query: 423  RCDNAVVQIPRAASNIFNEIYTEEVFTKNFHHDEEENQTLGMY 295
            +C+   V  PR  +  F E+  + +FT     D+++N T  +Y
Sbjct: 1030 KCEAKYVGNPRNGTPCFYELAVDFIFTFKLRSDDKDNHTSEIY 1072


>AL110487-4|CAB54427.1|  505|Caenorhabditis elegans Hypothetical
           protein Y39E4B.5 protein.
          Length = 505

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 8/37 (21%), Positives = 21/37 (56%)
 Frame = +1

Query: 307 CLIFFFIVMKVFCEHFFCIYLIKNIGSCSRDLYYGIV 417
           C +F F+V   FC  +  +++ + +G  + D+ + ++
Sbjct: 432 CFVFLFVVPSFFCLCYIYLFMPETLGKSTLDIIHEMI 468


>AF339882-1|AAK14396.1| 1329|Caenorhabditis elegans attractin protein.
          Length = 1329

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = -1

Query: 423  RCDNAVVQIPRAASNIFNEIYTEEVFTKNFHHDEEENQTLGMY 295
            +C+   V  PR  +  F E+  + +FT     D+++N T  +Y
Sbjct: 1030 KCEAKYVGNPRNGTPCFYELAVDFIFTFKLRSDDKDNHTSEIY 1072


>AF039043-9|AAB94196.1|  427|Caenorhabditis elegans Tetraspanin
           family protein 14,isoform a protein.
          Length = 427

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +2

Query: 176 VGVNYDVQISALLVYFTVFHIDICE-QRGGWLTLSSIMN 289
           V ++Y + ++  LV+FT+F+ D  E     WL L ++ N
Sbjct: 109 VFLSYILVVAVTLVFFTLFYTDTTEGLSANWLLLYAVKN 147


>AF039043-8|AAL02514.1|  451|Caenorhabditis elegans Tetraspanin
           family protein 14,isoform b protein.
          Length = 451

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +2

Query: 176 VGVNYDVQISALLVYFTVFHIDICE-QRGGWLTLSSIMN 289
           V ++Y + ++  LV+FT+F+ D  E     WL L ++ N
Sbjct: 133 VFLSYILVVAVTLVFFTLFYTDTTEGLSANWLLLYAVKN 171


>Z70780-6|CAA94823.1|  614|Caenorhabditis elegans Hypothetical
           protein F46B6.7 protein.
          Length = 614

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
 Frame = +1

Query: 118 DRLPEFKDSK*MSNHNEACSWSQ--LRCSNQCITCILHCISHRHM*TERWLANIELHHEY 291
           D +P F+DS      NE C W +  L      + C+L   S  +   +  L +++  HE+
Sbjct: 415 DTMPTFQDSDEEEEDNEWCEWQEDNLDADETRVVCLLCDASEDN--AQSLLEHMKTTHEF 472

Query: 292 SI 297
            +
Sbjct: 473 DL 474


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,732,979
Number of Sequences: 27780
Number of extensions: 289819
Number of successful extensions: 635
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)