Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30890
         (702 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    26   0.40 
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    22   4.9  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    22   6.5  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    22   6.5  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   8.6  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 25.8 bits (54), Expect = 0.40
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -2

Query: 500  RLWPNRQSRRSHCPKDKALGVLLVSSDA 417
            R+ P+  + + H PKDK++ VL   ++A
Sbjct: 1476 RINPDNHNEKLHIPKDKSVSVLSRENEA 1503


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/30 (30%), Positives = 13/30 (43%)
 Frame = +1

Query: 172 CSWSQLRCSNQCITCILHCISHRHM*TERW 261
           CS  +  CS     C+ H  S R +   +W
Sbjct: 93  CSAEKFECSKTSNPCLPHRNSDRDLNIRKW 122


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6
          variant 2 precursor protein.
          Length = 94

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = -2

Query: 98 CHNVCPQWTPKPL 60
          C   CP   PKPL
Sbjct: 50 CQRFCPNVVPKPL 62


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6
          variant 1 precursor protein.
          Length = 92

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = -2

Query: 98 CHNVCPQWTPKPL 60
          C   CP   PKPL
Sbjct: 50 CQRFCPNVVPKPL 62


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 449 ALGVLLVSSDATMP*YKSLEQL 384
           ALG LL   + + P  +SLE+L
Sbjct: 87  ALGALLSKGEESFPTARSLEKL 108


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,393
Number of Sequences: 438
Number of extensions: 3403
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)