Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30890
         (702 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g46330.1 68416.m05017 leucine-rich repeat protein kinase, put...    33   0.24 
At4g00905.1 68417.m00123 expressed protein                             29   3.0  
At3g46350.1 68416.m05020 leucine-rich repeat protein kinase, put...    29   3.9  
At1g01225.1 68414.m00037 NC domain-containing protein-related co...    29   3.9  
At5g15020.1 68418.m01761 paired amphipathic helix repeat-contain...    28   6.9  
At1g56650.1 68414.m06515 myb family transcription factor (MYB75)...    28   6.9  

>At3g46330.1 68416.m05017 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 878

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = -2

Query: 467 HCPKDKALGVLLVSSDATMP*YKSLEQLPIFLMRYIQKKCSQKTFITM 324
           H P+  +L + LV + AT+P   +LE  P+    YI K  S K +  M
Sbjct: 152 HIPRSNSLQICLVKTGATIPMISALELRPLANDTYIAKSGSLKYYFRM 199


>At4g00905.1 68417.m00123 expressed protein
          Length = 263

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +2

Query: 395 GICTTALSHRLKLVVRQALYLLDNDY 472
           G CTTA S  L+ V+ +A++LL N +
Sbjct: 124 GTCTTAPSDPLQTVIHRAMHLLQNGF 149


>At3g46350.1 68416.m05020 leucine-rich repeat protein kinase,
           putative contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 871

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -2

Query: 470 SHCPKDKALGVLLVSSDATMP*YKSLEQLPIFLMRYIQKKCSQKTFI 330
           ++ P   +L V LV ++ T+P   +LE  P+    YI    S +TF+
Sbjct: 153 TYIPLSNSLDVCLVKTNTTIPFISALELRPLPSNSYITTAGSLRTFV 199


>At1g01225.1 68414.m00037 NC domain-containing protein-related
           contains weak hit to Pfam profile PF04970: NC domain
          Length = 260

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 395 GICTTALSHRLKLVVRQALYLLDNDY 472
           G CTTA S     V+ +A+YLL N +
Sbjct: 114 GTCTTAQSDTTDSVIHRAMYLLQNGF 139


>At5g15020.1 68418.m01761 paired amphipathic helix repeat-containing
            protein similar to transcription co-repressor Sin3
            [Xenopus laevis] GI:4960210; contains Pfam profile
            PF02671: Paired amphipathic helix repeat
          Length = 1377

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 29/117 (24%), Positives = 46/117 (39%), Gaps = 1/117 (0%)
 Frame = -2

Query: 698  PYCIHLNASASRMIDASTSYFFMYIINQTYGKSVLLLIKNTLRKLIILKYKSLKQVTEQQ 519
            PY   +NA  S +  ++ +  F        G    +L   TL KLI    K L+ V    
Sbjct: 1165 PYARFMNALFSLLNGSAENSKFEDECRAIIGNQSYVLF--TLEKLIYKLVKQLQAVVADD 1222

Query: 518  VQNNL*RLWPNRQSRR-SHCPKDKALGVLLVSSDATMP*YKSLEQLPIFLMRYIQKK 351
            + N L +L+    SRR         L + L+ +    P   ++   P F   Y+Q +
Sbjct: 1223 MDNKLLQLYEYENSRRPGRSSSPSRLSIQLMDNIIEKPDAYAVSMEPTF-TSYLQNE 1278


>At1g56650.1 68414.m06515 myb family transcription factor (MYB75)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain; identical to cDNA putative transcription factor
           (MYB75) GI:3941507
          Length = 248

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
 Frame = -3

Query: 133 TPVIYLNIYKSRVTMFVLNGLLNHLTDYNK--IRTPC 29
           TP +  N+YK R   F +N   NHL    K  +  PC
Sbjct: 131 TPALKNNVYKPRPRSFTVNNDCNHLNAPPKVDVNPPC 167


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,365,117
Number of Sequences: 28952
Number of extensions: 246439
Number of successful extensions: 573
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)