Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30886
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha...   231   9e-62
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar...   230   2e-61
SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces ...    29   0.48 
SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|...    29   0.48 
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S...    28   1.5  
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom...    27   2.6  
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    27   2.6  
SPBC27.08c |sua1|SPBC28F2.01c|sulfate adenylyltransferase |Schiz...    27   3.4  
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    26   4.5  
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc...    26   5.9  
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    25   7.8  
SPAC18G6.06 |||U3 snoRNP-associated protein Utp11|Schizosaccharo...    25   7.8  

>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score =  231 bits (564), Expect = 9e-62
 Identities = 115/190 (60%), Positives = 139/190 (73%)
 Frame = -1

Query: 622 KRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKT 443
           KRA  RKKRK+ELGR  +NTR+GP+RIH VR RGGN K+RALRLD+GNFSWGSE  ++KT
Sbjct: 17  KRAQYRKKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRLDSGNFSWGSEGVSKKT 76

Query: 442 RIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAI 263
           RII V Y+ SNNELVRT TL K+AIV +DA PFR WYE+HY + +G  KG K T      
Sbjct: 77  RIIQVAYHPSNNELVRTNTLTKSAIVQIDAAPFRVWYETHYGILMG-SKGKKATSTP--- 132

Query: 262 INKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCGRADGYILEGKELE 83
               +S+   RK+ AR   +KV+ ALE QF  GRL A V+SRPGQ GR DGYILEG+EL 
Sbjct: 133 --NPKSKHVQRKHSARLGDSKVDSALETQFAAGRLYAVVSSRPGQSGRCDGYILEGEELH 190

Query: 82  FYLRKIKSKR 53
           FYLR++  K+
Sbjct: 191 FYLRRMAPKK 200



 Score = 29.1 bits (62), Expect = 0.64
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -3

Query: 671 MGISRDHWHKRRATGGKTCAHTQEEE 594
           MGI+RD  HKR ATG K   + ++ +
Sbjct: 1   MGITRDSRHKRSATGAKRAQYRKKRK 26


>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score =  230 bits (562), Expect = 2e-61
 Identities = 115/190 (60%), Positives = 139/190 (73%)
 Frame = -1

Query: 622 KRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKT 443
           KRA  RKKRK+ELGR  +NTR+GP+RIH VR RGGN K+RALRLD+GNFSWGSE  ++KT
Sbjct: 17  KRAQYRKKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRLDSGNFSWGSEGVSKKT 76

Query: 442 RIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAI 263
           RII V Y+ SNNELVRT TL K+AIV +DA PFR WYE+HY + +G  KG K T      
Sbjct: 77  RIIQVAYHPSNNELVRTNTLTKSAIVQIDAAPFRVWYETHYGILMG-SKGKKATATP--- 132

Query: 262 INKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCGRADGYILEGKELE 83
               +S+   RK+ AR   +KV+ ALE QF  GRL A V+SRPGQ GR DGYILEG+EL 
Sbjct: 133 --TPKSKHVQRKHSARLGDSKVDSALETQFAAGRLYAVVSSRPGQSGRCDGYILEGEELH 190

Query: 82  FYLRKIKSKR 53
           FYLR++  K+
Sbjct: 191 FYLRRMAPKK 200



 Score = 29.1 bits (62), Expect = 0.64
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -3

Query: 671 MGISRDHWHKRRATGGKTCAHTQEEE 594
           MGI+RD  HKR ATG K   + ++ +
Sbjct: 1   MGITRDSRHKRSATGAKRAQYRKKRK 26


>SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 655

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +1

Query: 76  DRTRVLCLLRCNHRRDHTDLGDSPRKPANAPCGIALLE 189
           D   + CLLR  H+RD  +  +  RK  N   G  LLE
Sbjct: 434 DANIIPCLLRSKHKRDKANPENKERKLVNNLLGAQLLE 471


>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 207

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -1

Query: 643 SEGPPVGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALR 494
           S+G    K+    +KRK  L R A   RL  + + S+ S+GG    +A +
Sbjct: 35  SKGVKTNKKEQEAEKRKAALERKAERERLEKEEMESLPSKGGKGSKKAAK 84


>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 26/83 (31%), Positives = 39/83 (46%)
 Frame = -1

Query: 577 PAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 398
           P  NT + PQ     RSR   T  R+L   +G  S  S  ++ +TR    V +AS+N L+
Sbjct: 530 PLQNTVISPQPTR--RSR---TPIRSL---SGRSSVASSRNSSRTRSYSNVSSASSNSLI 581

Query: 397 RTKTLVKNAIVVVDATPFRQWYE 329
              +   ++  V   TPF   +E
Sbjct: 582 SIISSKPSSSTVQRQTPFHSPFE 604


>SPCC132.01c ||SPCC1322.17c|DUF814 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1021

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 16/73 (21%), Positives = 33/73 (45%)
 Frame = -1

Query: 355 ATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQ 176
           +TP     + H       KKG+K+  A++    ++R  + AR+  A +   K   ++E+ 
Sbjct: 754 STPDTTGSDIHIVSEKRGKKGSKVITAKKVSAKERREARRARRQTALEESLKAPISIEDA 813

Query: 175 FHTGRLLACVASR 137
                +LA +  +
Sbjct: 814 TDPQTILAILKQK 826


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
            Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = -1

Query: 589  ELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRI 437
            EL    +N  +  Q+   + S    T YRA+ LDTG+     E +  K RI
Sbjct: 1108 ELASSKSNITIRWQQGGLIGSGSFGTVYRAVNLDTGDLMAVKEVALHKPRI 1158


>SPBC27.08c |sua1|SPBC28F2.01c|sulfate adenylyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = -3

Query: 680 QLKMGISRDHWHKRRATGGKTCAHTQEEEV*VRASRCKHQARSSAYPLRSFT 525
           QL+    R++W++  A   +   H    E+ VRA++ +H AR   +P+   T
Sbjct: 176 QLRSDFQRNNWNRVVAFQTRNPMHRAHRELTVRAAK-QHGARVLIHPVVGMT 226


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = -1

Query: 472 WGSEC--STRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRK 299
           WGS+     +K  + +V+  +++ +  +T  L         AT F  + +S+Y +PL R+
Sbjct: 250 WGSQSYLQEKKAGLAEVLNISTSQQKPKTTALDYEVFRHEMATKFSSFADSYYPVPLDRE 309

Query: 298 K 296
           +
Sbjct: 310 Q 310


>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
           Prp43|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 333 YHCLNGVASTTTIAFLTRVFVRTNS 407
           ++C N V S T +  +  VFVR NS
Sbjct: 518 FYCSNEVLSLTALLSVPNVFVRPNS 542


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 411 LDALYTTSMIRVLRVEHSDPQEKLPVSRR 497
           L+ + T S  +V R  H DP  KLP  RR
Sbjct: 193 LEGVKTKSGRKVHRPNHFDPLVKLPTRRR 221


>SPAC18G6.06 |||U3 snoRNP-associated protein
           Utp11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 249

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = -1

Query: 262 INKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCGRADGYILEGK 92
           ++ K  +K A + L RQ+  K   A EE+    RLL       G+ GR    ++ GK
Sbjct: 188 LHSKLKEKAATELLLRQKRDKKLAAAEERVELDRLL------QGKGGRQKKKVVNGK 238


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,765,384
Number of Sequences: 5004
Number of extensions: 54874
Number of successful extensions: 155
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)