Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30886
(697 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X67247-1|CAA47670.1| 208|Homo sapiens ribosomal protein S8 prot... 331 2e-90
BC070875-1|AAH70875.1| 208|Homo sapiens ribosomal protein S8 pr... 331 2e-90
AL592166-7|CAI13003.1| 208|Homo sapiens ribosomal protein S8 pr... 331 2e-90
AB062401-1|BAB93488.1| 208|Homo sapiens ribosomal protein S8 pr... 331 2e-90
AL592166-8|CAI13002.1| 188|Homo sapiens ribosomal protein S8 pr... 270 2e-72
BC005678-1|AAH05678.1| 80|Homo sapiens Similar to ribosomal pr... 120 5e-27
CR457284-1|CAG33565.1| 201|Homo sapiens FLJ11749 protein. 31 5.2
BC010108-1|AAH10108.1| 201|Homo sapiens chromatin modifying pro... 31 5.2
AY329087-1|AAQ91196.1| 201|Homo sapiens VPS20 protein. 31 5.2
AK021811-1|BAB13901.1| 201|Homo sapiens protein ( Homo sapiens ... 31 5.2
AB016767-1|BAA74724.1| 523|Homo sapiens telomerase transcriptas... 30 9.1
>X67247-1|CAA47670.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 331 bits (813), Expect = 2e-90
Identities = 150/193 (77%), Positives = 170/193 (88%)
Frame = -1
Query: 625 GKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRK 446
GKR P KKRKYELGRPAANT++GP+RIH+VR RGGN KYRALRLD GNFSWGSEC TRK
Sbjct: 16 GKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRK 75
Query: 445 TRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEA 266
TRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LPLGRKKGAKLT EE
Sbjct: 76 TRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEE 135
Query: 265 IINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCGRADGYILEGKEL 86
I+NKKRS+K +KY R++ AK+ LEEQF G+LLAC+ASRPGQCGRADGY+LEGKEL
Sbjct: 136 ILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKEL 195
Query: 85 EFYLRKIKSKRAK 47
EFYLRKIK+++ K
Sbjct: 196 EFYLRKIKARKGK 208
Score = 38.7 bits (86), Expect = 0.020
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = -3
Query: 671 MGISRDHWHKRRATGGK 621
MGISRD+WHKRR TGGK
Sbjct: 1 MGISRDNWHKRRKTGGK 17
>BC070875-1|AAH70875.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 331 bits (813), Expect = 2e-90
Identities = 150/193 (77%), Positives = 170/193 (88%)
Frame = -1
Query: 625 GKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRK 446
GKR P KKRKYELGRPAANT++GP+RIH+VR RGGN KYRALRLD GNFSWGSEC TRK
Sbjct: 16 GKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRK 75
Query: 445 TRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEA 266
TRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LPLGRKKGAKLT EE
Sbjct: 76 TRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEE 135
Query: 265 IINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCGRADGYILEGKEL 86
I+NKKRS+K +KY R++ AK+ LEEQF G+LLAC+ASRPGQCGRADGY+LEGKEL
Sbjct: 136 ILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKEL 195
Query: 85 EFYLRKIKSKRAK 47
EFYLRKIK+++ K
Sbjct: 196 EFYLRKIKARKGK 208
Score = 38.7 bits (86), Expect = 0.020
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = -3
Query: 671 MGISRDHWHKRRATGGK 621
MGISRD+WHKRR TGGK
Sbjct: 1 MGISRDNWHKRRKTGGK 17
>AL592166-7|CAI13003.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 331 bits (813), Expect = 2e-90
Identities = 150/193 (77%), Positives = 170/193 (88%)
Frame = -1
Query: 625 GKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRK 446
GKR P KKRKYELGRPAANT++GP+RIH+VR RGGN KYRALRLD GNFSWGSEC TRK
Sbjct: 16 GKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRK 75
Query: 445 TRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEA 266
TRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LPLGRKKGAKLT EE
Sbjct: 76 TRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEE 135
Query: 265 IINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCGRADGYILEGKEL 86
I+NKKRS+K +KY R++ AK+ LEEQF G+LLAC+ASRPGQCGRADGY+LEGKEL
Sbjct: 136 ILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKEL 195
Query: 85 EFYLRKIKSKRAK 47
EFYLRKIK+++ K
Sbjct: 196 EFYLRKIKARKGK 208
Score = 38.7 bits (86), Expect = 0.020
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = -3
Query: 671 MGISRDHWHKRRATGGK 621
MGISRD+WHKRR TGGK
Sbjct: 1 MGISRDNWHKRRKTGGK 17
>AB062401-1|BAB93488.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 331 bits (813), Expect = 2e-90
Identities = 150/193 (77%), Positives = 170/193 (88%)
Frame = -1
Query: 625 GKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRK 446
GKR P KKRKYELGRPAANT++GP+RIH+VR RGGN KYRALRLD GNFSWGSEC TRK
Sbjct: 16 GKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRK 75
Query: 445 TRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEA 266
TRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LPLGRKKGAKLT EE
Sbjct: 76 TRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEE 135
Query: 265 IINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCGRADGYILEGKEL 86
I+NKKRS+K +KY R++ AK+ LEEQF G+LLAC+ASRPGQCGRADGY+LEGKEL
Sbjct: 136 ILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKEL 195
Query: 85 EFYLRKIKSKRAK 47
EFYLRKIK+++ K
Sbjct: 196 EFYLRKIKARKGK 208
Score = 38.7 bits (86), Expect = 0.020
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = -3
Query: 671 MGISRDHWHKRRATGGK 621
MGISRD+WHKRR TGGK
Sbjct: 1 MGISRDNWHKRRKTGGK 17
>AL592166-8|CAI13002.1| 188|Homo sapiens ribosomal protein S8
protein.
Length = 188
Score = 270 bits (663), Expect = 2e-72
Identities = 133/193 (68%), Positives = 153/193 (79%)
Frame = -1
Query: 625 GKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRK 446
GKR P KKRKYELGRPAANT++GP+RIH+VR RGG C TRK
Sbjct: 16 GKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGG-------------------C-TRK 55
Query: 445 TRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEA 266
TRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LPLGRKKGAKLT EE
Sbjct: 56 TRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEE 115
Query: 265 IINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCGRADGYILEGKEL 86
I+NKKRS+K +KY R++ AK+ LEEQF G+LLAC+ASRPGQCGRADGY+LEGKEL
Sbjct: 116 ILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKEL 175
Query: 85 EFYLRKIKSKRAK 47
EFYLRKIK+++ K
Sbjct: 176 EFYLRKIKARKGK 188
Score = 38.7 bits (86), Expect = 0.020
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = -3
Query: 671 MGISRDHWHKRRATGGK 621
MGISRD+WHKRR TGGK
Sbjct: 1 MGISRDNWHKRRKTGGK 17
>BC005678-1|AAH05678.1| 80|Homo sapiens Similar to ribosomal
protein S8 protein.
Length = 80
Score = 120 bits (289), Expect = 5e-27
Identities = 54/80 (67%), Positives = 66/80 (82%)
Frame = -1
Query: 286 LTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCGRADGY 107
LT EE I+NKKRS+K +KY R++ AK+ LEEQF G+LLAC+ASRPGQCGRADGY
Sbjct: 1 LTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGY 60
Query: 106 ILEGKELEFYLRKIKSKRAK 47
+LEGKELEFYLRKIK+++ K
Sbjct: 61 VLEGKELEFYLRKIKARKGK 80
>CR457284-1|CAG33565.1| 201|Homo sapiens FLJ11749 protein.
Length = 201
Score = 30.7 bits (66), Expect = 5.2
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = -1
Query: 307 GRKKGAKLTEAEEAIINKKRSQKTARKYLAR--QRLAKVEGALEEQFHTGR 161
GRKK +++TE ++AI+ K+ + R+Y R Q+L + + GR
Sbjct: 6 GRKKQSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLERERALARQLLRDGR 56
>BC010108-1|AAH10108.1| 201|Homo sapiens chromatin modifying
protein 6 protein.
Length = 201
Score = 30.7 bits (66), Expect = 5.2
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = -1
Query: 307 GRKKGAKLTEAEEAIINKKRSQKTARKYLAR--QRLAKVEGALEEQFHTGR 161
GRKK +++TE ++AI+ K+ + R+Y R Q+L + + GR
Sbjct: 6 GRKKQSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLERERALARQLLRDGR 56
>AY329087-1|AAQ91196.1| 201|Homo sapiens VPS20 protein.
Length = 201
Score = 30.7 bits (66), Expect = 5.2
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = -1
Query: 307 GRKKGAKLTEAEEAIINKKRSQKTARKYLAR--QRLAKVEGALEEQFHTGR 161
GRKK +++TE ++AI+ K+ + R+Y R Q+L + + GR
Sbjct: 6 GRKKQSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLERERALARQLLRDGR 56
>AK021811-1|BAB13901.1| 201|Homo sapiens protein ( Homo sapiens
cDNA FLJ11749 fis, clone HEMBA1005558, weakly similar to
NUCLEAR PROTEIN SNF7. ).
Length = 201
Score = 30.7 bits (66), Expect = 5.2
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = -1
Query: 307 GRKKGAKLTEAEEAIINKKRSQKTARKYLAR--QRLAKVEGALEEQFHTGR 161
GRKK +++TE ++AI+ K+ + R+Y R Q+L + + GR
Sbjct: 6 GRKKQSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLERERALARQLLRDGR 56
>AB016767-1|BAA74724.1| 523|Homo sapiens telomerase transcriptase
protein.
Length = 523
Score = 29.9 bits (64), Expect = 9.1
Identities = 25/70 (35%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
Frame = +3
Query: 441 RVLRVEHSDPQEKLPVSRRSARYLVFPPRERTE----WIR*GPSLVFAAGRPNSYFLFLR 608
R R E PQ+ + V RS R L PPR RT+ W S AG + LR
Sbjct: 411 RTARCELRSPQQPVSVPGRSPRALWRPPRRRTQTPVAWCSCSASTAPLAG------VRLR 464
Query: 609 MGARFPTGGP 638
G P G P
Sbjct: 465 AGLPAPAGAP 474
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,987,512
Number of Sequences: 237096
Number of extensions: 2248905
Number of successful extensions: 4894
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4894
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8007229802
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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