Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30886
         (697 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g20290.1 68418.m02415 40S ribosomal protein S8 (RPS8A) riboso...   250   7e-67
At5g59240.1 68418.m07424 40S ribosomal protein S8 (RPS8B) 40S ri...   246   1e-65
At2g47990.1 68415.m06006 transducin family protein / WD-40 repea...    31   0.73 
At1g73260.1 68414.m08478 trypsin and protease inhibitor family p...    29   2.9  
At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 ...    29   3.9  
At5g41820.1 68418.m05092 geranylgeranyl transferase alpha subuni...    28   6.8  

>At5g20290.1 68418.m02415 40S ribosomal protein S8 (RPS8A) ribosomal
           protein S8 - Zea mays, PIR:T04088
          Length = 222

 Score =  250 bits (612), Expect = 7e-67
 Identities = 125/204 (61%), Positives = 153/204 (75%), Gaps = 11/204 (5%)
 Frame = -1

Query: 625 GKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRLDTGNFSWGSECSTR 449
           GK+   RKKRKYE+GR  ANT+L   + +  +R RGGN K+RALRLDTGN+SWGSE +TR
Sbjct: 16  GKQKQWRKKRKYEMGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEATTR 75

Query: 448 KTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGR-KKGAKLT--- 281
           KTR++DVVYNASNNELVRTKTLVK+AIV VDA PF+QWY SHY + LGR KK A  T   
Sbjct: 76  KTRVLDVVYNASNNELVRTKTLVKSAIVQVDAAPFKQWYLSHYGVELGRKKKSASSTKKD 135

Query: 280 --EAEEAII----NKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCGR 119
             E EEA +      K+S    RK  +RQ    ++  +E+QF +GRLLAC++SRPGQCGR
Sbjct: 136 GEEGEEAAVAAPEEVKKSNHLLRKIASRQEGRSLDSHIEDQFASGRLLACISSRPGQCGR 195

Query: 118 ADGYILEGKELEFYLRKIKSKRAK 47
           ADGYILEGKELEFY++KI+ K+ K
Sbjct: 196 ADGYILEGKELEFYMKKIQKKKGK 219



 Score = 34.3 bits (75), Expect = 0.078
 Identities = 15/17 (88%), Positives = 15/17 (88%)
 Frame = -3

Query: 671 MGISRDHWHKRRATGGK 621
           MGISRD  HKRRATGGK
Sbjct: 1   MGISRDSIHKRRATGGK 17


>At5g59240.1 68418.m07424 40S ribosomal protein S8 (RPS8B) 40S
           ribosomal protein S8, Prunus armeniaca, EMBL:AF071889
          Length = 210

 Score =  246 bits (601), Expect = 1e-65
 Identities = 121/194 (62%), Positives = 144/194 (74%), Gaps = 1/194 (0%)
 Frame = -1

Query: 625 GKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRLDTGNFSWGSECSTR 449
           GK+   RKKRKYELGR  ANT+L   + +  +R RGGN K+RALRLDTGNFSWGSE  TR
Sbjct: 16  GKQKMWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNFSWGSEAVTR 75

Query: 448 KTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEE 269
           KTRI+DV YNASNNELVRT+TLVK+AIV VDA PF+Q Y  HY + +GRKK  +    EE
Sbjct: 76  KTRILDVAYNASNNELVRTQTLVKSAIVQVDAAPFKQGYLQHYGVDIGRKKKGEAVTTEE 135

Query: 268 AIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCGRADGYILEGKE 89
                K+S    RK   RQ    ++  LEEQF +GRLLAC+ASRPGQCGRADGYILEGKE
Sbjct: 136 V----KKSNHVQRKLEMRQEGRALDSHLEEQFSSGRLLACIASRPGQCGRADGYILEGKE 191

Query: 88  LEFYLRKIKSKRAK 47
           LEFY++K++ K+ K
Sbjct: 192 LEFYMKKLQKKKGK 205



 Score = 34.3 bits (75), Expect = 0.078
 Identities = 15/17 (88%), Positives = 15/17 (88%)
 Frame = -3

Query: 671 MGISRDHWHKRRATGGK 621
           MGISRD  HKRRATGGK
Sbjct: 1   MGISRDSIHKRRATGGK 17


>At2g47990.1 68415.m06006 transducin family protein / WD-40 repeat
           family protein similar to Vegetatible incompatibility
           protein HET-E-1 (SP:Q00808) {Podospora anserina};
           contains 5 WD-40 repeats (PF00400); similar to  beta
           transducin-like protein HET-E2C*4
           (GP:17225206)[Podospora anserina]
          Length = 530

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
 Frame = -1

Query: 301 KKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVAS-RPGQC 125
           KKG KLT  ++ ++ K R ++     L  ++ A V   +EE     +L+ CV++   G+ 
Sbjct: 393 KKGLKLTRHDK-LLKKFRHKEALVSVLEEKKPANVVAVMEELVARRKLMKCVSNMEEGEL 451

Query: 124 GRADGYI 104
           G   G++
Sbjct: 452 GMLLGFL 458


>At1g73260.1 68414.m08478 trypsin and protease inhibitor family
           protein / Kunitz family protein similar to trypsin
           inhibitor propeptide [Brassica oleracea] GI:841208;
           contains Pfam profile PF00197: Trypsin and protease
           inhibitor
          Length = 215

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -1

Query: 403 LVRTKTLVKNAI-VVVDATPFRQWYESHYTLPLGRKKGAKLTEA 275
           L  T  L  NA   VVD      ++ES+Y LP+ R +G  LT A
Sbjct: 16  LALTAVLASNAYGAVVDIDGNAMFHESYYVLPVIRGRGGGLTLA 59


>At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 WD
           repeats (PF00400); similar to Fzr1 (GI:6463679) {Homo
           sapiens}; similar to WD repeat protein Srw1
           -Schizosaccharomyces pombe,PID:d1023012
          Length = 475

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = -1

Query: 523 GGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVV 362
           GG T  R +R      +    C    +++ ++V++ + NELV T    +N I+V
Sbjct: 353 GGGTADRCIRFWNTTTNTHLNCVDTNSQVCNLVWSKNVNELVSTHGYSQNQIIV 406


>At5g41820.1 68418.m05092 geranylgeranyl transferase alpha
           subunit-related / RAB geranylgeranyltransferase alpha
           subunit-related low similarity to SP|Q08602 [Rattus
           norvegicus]
          Length = 687

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = +3

Query: 393 VRTNSLLDALYTTSMIRVLRVEHSDPQEKLPVSRRSARYLVFPP 524
           +R+ S LD+L     +RVL V H+    +LPV   + RYL   P
Sbjct: 580 IRSFSALDSLRHLKQLRVLDVSHNHICGELPVD--TTRYLCSSP 621


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,759,504
Number of Sequences: 28952
Number of extensions: 300580
Number of successful extensions: 852
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)