Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30885
         (739 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    25   0.48 
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    23   2.6  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    23   2.6  
AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    23   2.6  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    22   4.5  
Z69742-1|CAA93624.1|   72|Tribolium castaneum arylphorin protein.      22   5.9  

>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = +3

Query: 354 PREGDNEEESDASRDKSHAPQTEQLISAHHIRKR*CIYIKQE 479
           P   + + + D S D      T+Q  S H  RKR  ++ K +
Sbjct: 10  PAVSERDPDEDNSEDSKDPHLTDQQASGHKKRKRRVLFSKAQ 51


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 166  LVADYKRLETINKEYTTKLEEVGELQ 243
            +VAD ++L+ IN EY  + E   E++
Sbjct: 1344 IVADLQKLKGINNEYEDQTEVPVEMR 1369


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 166  LVADYKRLETINKEYTTKLEEVGELQ 243
            +VAD ++L+ IN EY  + E   E++
Sbjct: 1344 IVADLQKLKGINNEYEDQTEVPVEMR 1369


>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 165 ILPFLHTFFNFHLWVVQVFSQ 103
           I  F+ TFFN  L ++ VFS+
Sbjct: 65  IANFMLTFFNVSLRIILVFSK 85


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -2

Query: 228 FF*FCCVLF 202
           FF FCC+LF
Sbjct: 12  FFSFCCILF 20


>Z69742-1|CAA93624.1|   72|Tribolium castaneum arylphorin protein.
          Length = 72

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
 Frame = +1

Query: 643 SILKVNGSRIKGW---WRLHHFISTVVAGILLIW 735
           S+ KV G R +G    WR  H + T+V  +  +W
Sbjct: 3   SLWKVRG-RCEGKDSKWRGEHMVGTIVVVVRGVW 35


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,334
Number of Sequences: 336
Number of extensions: 3140
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19779950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)