Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30885
         (739 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    24   1.7  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   5.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.2  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   6.9  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   9.1  

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 115 LNHPKMEVEECVKEWEDLVADY 180
           L   + E  E VKEW D V +Y
Sbjct: 264 LTKDQPETYELVKEWRDFVDNY 285


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -3

Query: 590 NCSGLKSIYR 561
           NCSG+ S+YR
Sbjct: 118 NCSGITSVYR 127


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +2

Query: 233 ANCKQHV*RNWNTRNIAC 286
           A CK +  R WNT  + C
Sbjct: 763 AGCKCYNDRTWNTNAVDC 780


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 11/56 (19%)
 Frame = +1

Query: 289 IINAALKRLEKKGGVKDERV-----------TNLEKEIMKRKAMLHEIKATLPKQN 423
           I++    R  KKGG+KD  +           +N E EIMK   +L+     + + N
Sbjct: 176 IVSYPKSRSRKKGGLKDNLIPDKNDPDSKECSNQEYEIMKDNLLLYNHARLMSQDN 231


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +1

Query: 532 AIAFILAVGNLYIDFRPLQLILIFLLVWYYC 624
           ++ ++LA+  LYI F  L L+   L++W +C
Sbjct: 46  SLHYLLAL--LYILFTFLALLGNGLVIWIFC 74


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,842
Number of Sequences: 438
Number of extensions: 3732
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)