Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30884
         (609 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy...    29   0.70 
SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1 |Schiz...    28   0.93 
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    27   1.6  
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    27   2.8  
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   3.7  
SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit |...    26   3.7  
SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyce...    26   5.0  
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    26   5.0  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    26   5.0  
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb...    25   6.5  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    25   6.5  
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ...    25   8.7  
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po...    25   8.7  
SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces pombe...    25   8.7  

>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 20/85 (23%), Positives = 36/85 (42%)
 Frame = +2

Query: 116 QRERQNRPVTNGHKHYPTTSNSGPTISLEEAVSRSTLNPLAAEFVPSQSRLPTHSKQTTE 295
           ++ +++ P T+  KH P  + + PT S+  + SR     +A  F+ S         ++ E
Sbjct: 251 EQPKEHSPATS--KHEPEETPASPTPSVSASTSRERSTSVAPSFITSDQAATPDVLKSEE 308

Query: 296 EKTEQLPVQVQESRDSPESCTVSSP 370
              E    +  E   +P    V SP
Sbjct: 309 AHVESFSKE-SEKDQTPIPEDVPSP 332


>SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 451

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +2

Query: 89  CIEAMLEDEQRERQNRPVTNGHKHYPTTSNSGPTISLEEAVSRSTLNPLA 238
           C   + ED   E  ++ V +G   YP   N+  T+ + EAV  S L  +A
Sbjct: 229 CSMYVHEDADMELASKLVLDGKTDYPAACNAIETLLINEAVLSSHLPKIA 278


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1364

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 20/73 (27%), Positives = 31/73 (42%)
 Frame = +2

Query: 287 TTEEKTEQLPVQVQESRDSPESCTVSSPDPEPIVEKTEVSLXXXXXXXXXXXXXXXXSSV 466
           TTE+    LP +V       +   VS+ D +  + KTE  L                SSV
Sbjct: 708 TTEKPLSSLPEEVSRQPTDDKGEQVSNADVDSGLSKTE-RLTIQQTNEIKHVPTNTTSSV 766

Query: 467 EVPQEKAEKRPKE 505
           ++PQ+ + +  KE
Sbjct: 767 KLPQQPSNEDEKE 779


>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 15/64 (23%), Positives = 30/64 (46%)
 Frame = +2

Query: 119 RERQNRPVTNGHKHYPTTSNSGPTISLEEAVSRSTLNPLAAEFVPSQSRLPTHSKQTTEE 298
           +ER+        K +PT   S P I+  +  +      L A+   ++ RLP  S+  ++ 
Sbjct: 341 KERKRSVENEMLKPHPTIFESPPEITSFDKSNAVEAEALTAKLKSNEERLPVSSQPGSDA 400

Query: 299 KTEQ 310
           K+++
Sbjct: 401 KSQE 404


>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 682

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +2

Query: 146 NGHKHYPT-TSNSGPTISLEEAVSRSTLNPLAAEFVPSQSRLPTHSK 283
           + H H P+  SNSGPT SL    S S+ +   A      S+ P+ +K
Sbjct: 376 SNHLHSPSPNSNSGPTDSLSAPNSTSSPSMAHANGASFASQYPSLNK 422


>SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 661

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
 Frame = +3

Query: 228 TPWLQNLYRANQGYQHTANRLQKRRQNNYQFKCKNQETVQR-------VVQSRLRILNQL 386
           T  LQ  Y  N  Y  T N+L K  ++ Y F   N+E  QR       V++ R  +LN+ 
Sbjct: 66  TKALQEKYLQNI-YALTQNQLFKNVED-YSFYNLNREKFQRDKQTIVGVMRKRRHVLNKK 123

Query: 387 WKRLKFLW 410
            KRL+  W
Sbjct: 124 IKRLQSHW 131


>SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 469

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +2

Query: 275 HSKQTTEEKTEQLPVQVQESRDSPESCTVSSPDPEPIVEKTEVSL 409
           HSK    ++   LP+  Q S+ SP S      D E I+ + + ++
Sbjct: 376 HSKSLPVQRASVLPIIKQSSQTSPVSNNSMIRDSESIINERKENI 420


>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 20/83 (24%), Positives = 38/83 (45%)
 Frame = +2

Query: 119 RERQNRPVTNGHKHYPTTSNSGPTISLEEAVSRSTLNPLAAEFVPSQSRLPTHSKQTTEE 298
           + R++R     HK+ P +  +  T +  E   RST +PL+ + + S++ L     +    
Sbjct: 740 KSRESRLKKEKHKNRPASKGTYTTYTSSEERQRSTEDPLSHDTL-SRTILNDQIVKGNVT 798

Query: 299 KTEQLPVQVQESRDSPESCTVSS 367
           +    P+ V E R S    ++ S
Sbjct: 799 EIPLPPLAVNEKRASVAVSSIPS 821


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 21/82 (25%), Positives = 35/82 (42%)
 Frame = +2

Query: 158 HYPTTSNSGPTISLEEAVSRSTLNPLAAEFVPSQSRLPTHSKQTTEEKTEQLPVQVQESR 337
           H P +S    +  ++   S+S  +P   +F  S     +H+K   +    QLP+      
Sbjct: 41  HKPPSSIESVSTLIQPNKSQSVTSPYVKQFTFSSKEYNSHNKHALQ--NSQLPLP----- 93

Query: 338 DSPESCTVSSPDPEPIVEKTEV 403
            +PE  TV  P     VE T++
Sbjct: 94  KTPEKSTVHRPKANK-VEVTDL 114


>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 741

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
 Frame = +2

Query: 119 RERQNRPVTNGHKHYPTTSNSGPTISLEEAVSRSTLNPLAAEFVPS-QSRLPTHSKQTT 292
           R   N PV N H   P ++ S PT   E          + AE   S Q   P+ S+ +T
Sbjct: 237 RSATNTPVENTHPENPDSNTSTPTTRSEPLAGEGA--SIDAENASSRQETTPSDSRPST 293


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 16/63 (25%), Positives = 26/63 (41%)
 Frame = +2

Query: 98  AMLEDEQRERQNRPVTNGHKHYPTTSNSGPTISLEEAVSRSTLNPLAAEFVPSQSRLPTH 277
           A  +    +R+  P      H   T  +  T S+EE   R+   P+A    PS+     H
Sbjct: 463 AKAQPAPEKRRGEPAVQTRNHSKRTRTA--TSSVEETTPRAFNVPIAQNKNPSELEFLEH 520

Query: 278 SKQ 286
           ++Q
Sbjct: 521 ARQ 523


>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 463

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
 Frame = +2

Query: 167 TTSNSGPTISLEEAVSRSTLNPLAAEFVPSQSRLPTHSKQTTEEKTEQLPVQVQESRDSP 346
           T S   P +  E        + L +  + S S L  H +++   KTE L   + +S ++ 
Sbjct: 122 TLSMGEPVVDSEIEEEEDLASQLTSRAI-SLSNLSLHGRESEPSKTE-LATSIPQSNEAS 179

Query: 347 ES-CTVSSPDPEPI 385
           +S      P PE I
Sbjct: 180 KSHLFTQEPTPEEI 193


>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 875

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +2

Query: 275 HSKQTTEEKTEQLPVQVQESRDSPESCTVSSPDPEPIVEKTEVS 406
           HS+  TEE+      ++ ++    E  TVS   P P +   E++
Sbjct: 435 HSQNQTEEQGNSNAPELNKNDYEGEEITVSQKSPSPSLPPNELN 478


>SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 523

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 16/64 (25%), Positives = 27/64 (42%)
 Frame = +2

Query: 116 QRERQNRPVTNGHKHYPTTSNSGPTISLEEAVSRSTLNPLAAEFVPSQSRLPTHSKQTTE 295
           ++ + N P  + +     +S S PT+S   +V      P        QS+L +   +  E
Sbjct: 349 KKNKNNSPTQSENVSASASSGSSPTVSRANSVIDVDAYPPEKRRRKEQSKLLSFFAKQKE 408

Query: 296 EKTE 307
           EK E
Sbjct: 409 EKEE 412


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,928,530
Number of Sequences: 5004
Number of extensions: 33666
Number of successful extensions: 154
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)