Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30884
(609 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_07_0130 + 13241085-13241151,13241268-13241339,13242458-132428... 31 0.71
09_04_0078 + 14379720-14379786,14379903-14379974,14381093-143814... 31 0.71
07_01_0549 + 4082672-4082731,4083424-4083489,4083628-4083674,408... 31 0.71
02_01_0409 - 2978104-2978642,2979106-2979931,2980112-2982178 31 0.94
02_02_0307 - 8809724-8811589,8811681-8811762,8812130-8812242,881... 30 1.2
02_05_0959 + 33086498-33086544,33087295-33087967,33088665-330890... 30 1.6
03_04_0020 - 16504322-16504654,16504758-16504785,16504937-165049... 29 3.8
02_02_0238 + 8163922-8164362,8165008-8165118,8165205-8165249,816... 29 3.8
09_04_0605 + 18903601-18903804,18904480-18904647 28 5.0
07_03_1258 + 25244863-25245282,25246419-25246568,25246665-252468... 28 5.0
06_01_0692 - 5047162-5047441,5047602-5047726,5048257-5048327,504... 28 5.0
01_01_0060 + 477667-477816,479312-479722 28 5.0
06_03_0092 + 16546204-16546693,16546958-16547028,16547145-165472... 28 6.7
06_03_0032 - 15697530-15697669,15699215-15699437,15699823-156999... 28 6.7
03_01_0438 + 3399203-3399297,3399389-3399480,3399638-3399750,340... 28 6.7
11_06_0610 - 25449085-25453284 27 8.8
06_02_0168 - 12533753-12533764,12533885-12534169 27 8.8
>10_07_0130 +
13241085-13241151,13241268-13241339,13242458-13242862,
13243057-13243112,13244116-13244274,13244379-13244498,
13244591-13245361,13245902-13246078,13246192-13246669,
13247502-13248094
Length = 965
Score = 31.1 bits (67), Expect = 0.71
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +2
Query: 113 EQRERQNRPVTNGHKHYPTTSNSGPTISLEEAVSRSTLNPLAAEFVPSQS 262
E + R GH H+ T N PT E V +T+N LA P++S
Sbjct: 436 EGNKNTPRSSARGHHHHQTVEN--PTAGDETNVQATTINVLACNAAPTES 483
>09_04_0078 +
14379720-14379786,14379903-14379974,14381093-14381497,
14382835-14382911,14383016-14383135,14383227-14383997,
14384933-14385146,14385269-14385735
Length = 730
Score = 31.1 bits (67), Expect = 0.71
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = +2
Query: 134 RPVTNGHKHYPTTSNSGPTISLEEAVSRSTLNPLAAEFVPSQS 262
R GH H+ T N PT S E V +T+N LA P++S
Sbjct: 397 RSSARGHHHHRTMEN--PTASDETNVQATTINVLARNAAPTES 437
>07_01_0549 +
4082672-4082731,4083424-4083489,4083628-4083674,
4083757-4083802,4083905-4083985,4084105-4084147,
4084258-4084307,4084392-4084473,4084538-4084587,
4084687-4084760,4084870-4084921,4085034-4085459,
4085816-4086403
Length = 554
Score = 31.1 bits (67), Expect = 0.71
Identities = 27/89 (30%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
Frame = +2
Query: 110 DEQRERQNRPVTNGHKHYPTTSNSGPTISLEEAVSRSTLNPLAAEFVPSQSRLPTHSKQT 289
DE + VT P ++S P I LE + T + AAE PS+ L S+ T
Sbjct: 318 DEVIHGNHSRVTKSPAPTPRRASSTPRIRLEPS---KTFHARAAETPPSKCSLERASQPT 374
Query: 290 TEEKTEQLPVQVQESRDSPESCT-VSSPD 373
T +Q E R + T + SPD
Sbjct: 375 RRASTPVNMLQTPEKRQGADILTRLKSPD 403
>02_01_0409 - 2978104-2978642,2979106-2979931,2980112-2982178
Length = 1143
Score = 30.7 bits (66), Expect = 0.94
Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
Frame = +2
Query: 164 PTTSNSGPTISLEEAVSRSTLNPLAAEFVPSQSRLPTHSKQTTEEKTEQLPVQVQESRDS 343
P T N+ P + + RST LA SR + EEK ++ + QE
Sbjct: 1030 PNTLNASPQAAKKRLRLRSTRPALALRRTVEGSRRRATAGFPVEEKRPRVVAEAQERETG 1089
Query: 344 PE---SCTVSSPDPEP 382
P+ C SP P P
Sbjct: 1090 PQIRPPCRRRSPPPPP 1105
>02_02_0307 - 8809724-8811589,8811681-8811762,8812130-8812242,
8812361-8812492,8812681-8812864,8813002-8813135,
8813552-8813656,8813738-8813839,8813930-8814022,
8814136-8814456,8814595-8814696,8814791-8814853,
8815213-8815708,8815964-8816124,8816213-8816743,
8817077-8817118,8817203-8817334,8817639-8817703,
8817858-8818169,8818262-8818334,8818425-8818517,
8819440-8819501,8819740-8819809
Length = 1777
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +2
Query: 146 NGHKHYPTTSNSGPTISLEEAVSRST--LNPLAAEFVPSQSRLP 271
+GH+ S + L EA + +T +NP AAEFVP QSR P
Sbjct: 1605 SGHRGPRNKSALPSSEGLTEANTFATRVMNPNAAEFVPGQSRSP 1648
>02_05_0959 +
33086498-33086544,33087295-33087967,33088665-33089058,
33089140-33089210,33089373-33089497,33089705-33089821,
33094128-33094238,33094321-33094413,33094726-33094984,
33095067-33095189
Length = 670
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = +2
Query: 218 STLNPLAAEFVPSQSRLPTHSKQTTE 295
+TLNP AAEFVPS R P S+ +
Sbjct: 42 TTLNPNAAEFVPSTFRSPFGSRTVAD 67
>03_04_0020 -
16504322-16504654,16504758-16504785,16504937-16504989,
16505377-16505463,16505636-16505704,16506071-16506145,
16507040-16507210,16507693-16507793,16508062-16508139,
16508492-16508648,16508737-16509006,16509369-16509485,
16510250-16510339,16510417-16510629,16510742-16510891,
16511929-16512342
Length = 801
Score = 28.7 bits (61), Expect = 3.8
Identities = 21/77 (27%), Positives = 37/77 (48%)
Frame = +1
Query: 121 GETESASNEWTQALSYDK*QWPYNLP*RSCLEINPKPPGCRICTEPIKVTNTQQTDYRRE 300
GE A+ W+Q L YD Q+ ++P + +NP P ++ + K+ T + E
Sbjct: 192 GEDIFATIRWSQKLLYDNGQFSVDIPFQFPQYVNPLP---KVFMKKEKIQLTLNSGVSNE 248
Query: 301 DRTITSSSARIKRQSRE 351
+ SS +K +SR+
Sbjct: 249 -IVLKGSSHPLKERSRQ 264
>02_02_0238 +
8163922-8164362,8165008-8165118,8165205-8165249,
8166066-8166138,8166215-8166327,8166430-8166489,
8167287-8167334,8167422-8167490,8167618-8167679,
8167771-8167828
Length = 359
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/25 (60%), Positives = 17/25 (68%)
Frame = +2
Query: 197 LEEAVSRSTLNPLAAEFVPSQSRLP 271
LEE +S+ LNP A EFVPS R P
Sbjct: 64 LEELMSK--LNPRAQEFVPSSRRAP 86
>09_04_0605 + 18903601-18903804,18904480-18904647
Length = 123
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/72 (23%), Positives = 33/72 (45%)
Frame = +3
Query: 123 RDRIGQ*RMDTSIILRQVTVALQSPLKKLSRDQP*TPWLQNLYRANQGYQHTANRLQKRR 302
R+R D + LR PL++L+RD+ T ++ + N Q + Q+++
Sbjct: 37 RERFRHESGDAAAALRGAGAGAVRPLRELARDKQETTIRAHILKPNTSNQQQQQQQQQQQ 96
Query: 303 QNNYQFKCKNQE 338
Q Q + + Q+
Sbjct: 97 QQQQQQQQQQQQ 108
>07_03_1258 +
25244863-25245282,25246419-25246568,25246665-25246877,
25246979-25247068,25247311-25247424,25247881-25248150,
25248251-25248407,25248691-25248741,25248742-25248819,
25249357-25249457,25249832-25250002,25250136-25250210,
25251527-25251793
Length = 718
Score = 28.3 bits (60), Expect = 5.0
Identities = 19/77 (24%), Positives = 38/77 (49%)
Frame = +1
Query: 121 GETESASNEWTQALSYDK*QWPYNLP*RSCLEINPKPPGCRICTEPIKVTNTQQTDYRRE 300
G SA+ W+Q L YD ++ ++P R +NP P ++ + K+ T + + +E
Sbjct: 194 GADISATIRWSQKLHYDNGRFSVDIPFRFPYYVNPLP---KVFMKREKIQLTVNSGFSKE 250
Query: 301 DRTITSSSARIKRQSRE 351
+ +S +K + R+
Sbjct: 251 -VLLQGTSHPLKEKGRQ 266
>06_01_0692 -
5047162-5047441,5047602-5047726,5048257-5048327,
5048453-5048834,5049389-5050126
Length = 531
Score = 28.3 bits (60), Expect = 5.0
Identities = 18/54 (33%), Positives = 24/54 (44%)
Frame = +2
Query: 218 STLNPLAAEFVPSQSRLPTHSKQTTEEKTEQLPVQVQESRDSPESCTVSSPDPE 379
+ LNP AAEFVPS R S ++ L + D ES ++ D E
Sbjct: 22 TALNPNAAEFVPSCIRPSFESSAVSDVSKADLRASGKTILDRSESSKSNNSDDE 75
>01_01_0060 + 477667-477816,479312-479722
Length = 186
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 152 HKHYPTTSNSGPTISLEEAVSRSTLNPLAAEFV 250
H HY T+S+S P S +EAV++ AA ++
Sbjct: 34 HHHYSTSSSSSPPSSTKEAVTQLDHLEQAAAYI 66
>06_03_0092 + 16546204-16546693,16546958-16547028,16547145-16547221,
16547322-16547469,16550080-16550148,16550348-16550509,
16550625-16550785,16551240-16551324,16552068-16552144,
16552234-16552441,16555844-16555921,16556463-16556591,
16556665-16556808,16556893-16557038,16557137-16557293,
16557391-16557449,16557582-16557741,16557849-16557998,
16558093-16558229,16558325-16558471,16558556-16558657,
16558742-16558799,16558895-16558996,16559729-16559766,
16559868-16559994,16560075-16560245,16560334-16560465,
16560577-16560686,16560866-16560926,16561031-16561208,
16561293-16561498,16561590-16561709,16561903-16562001,
16562152-16562370,16562701-16562840,16563175-16563286,
16563375-16563425,16563509-16563589,16563683-16563853,
16563934-16564089,16564174-16564380,16565145-16565215,
16565315-16565414,16565783-16565839,16566156-16566212,
16566308-16566388,16566467-16566606,16566641-16566764
Length = 2041
Score = 27.9 bits (59), Expect = 6.7
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +2
Query: 224 LNPLAAEFVPSQSRLPTHSKQTTEEKTEQLPVQVQESRDSPESCTVSSPDPE 379
L A PS+ L SK + E + V +S+ +PES +SSP E
Sbjct: 1588 LRQQAVSMAPSKI-LSGRSKSILQRNAESVHVSSGDSKAAPESNNISSPKKE 1638
>06_03_0032 - 15697530-15697669,15699215-15699437,15699823-15699929,
15700047-15700224,15700393-15700455,15700474-15700602,
15701211-15701430,15702162-15702262,15702954-15703062,
15705169-15705290,15705473-15705515,15705848-15705903,
15705983-15706089,15706167-15706342,15706507-15706618,
15706711-15706759,15707184-15707276,15707452-15707571,
15707686-15707787,15709442-15709540,15710103-15710237,
15710421-15710499,15710747-15710822,15710904-15710993,
15711139-15711217,15711304-15711338,15711457-15711531,
15712628-15713375
Length = 1221
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +3
Query: 291 QKRRQNNYQFKCKNQETVQRVVQSRLRILNQL-WKRLKFLWN 413
+++R NN C+ ET +R ++R R +L WKRL+ +WN
Sbjct: 1169 RQQRYNNGD-ACEEGET-ERQAEARRRAGQELRWKRLRDVWN 1208
>03_01_0438 +
3399203-3399297,3399389-3399480,3399638-3399750,
3400345-3400610,3400793-3400864,3401023-3401098,
3401241-3401339,3401432-3401586,3401679-3401783,
3401880-3401966,3402459-3402543,3402626-3402734,
3403468-3403544,3403635-3403715,3404137-3404328,
3404415-3404528,3404650-3404742,3404864-3404990,
3405075-3405151,3405455-3405502,3405588-3405657,
3405737-3405810,3405895-3406005,3406222-3406300,
3406936-3408320
Length = 1293
Score = 27.9 bits (59), Expect = 6.7
Identities = 25/92 (27%), Positives = 39/92 (42%)
Frame = +2
Query: 131 NRPVTNGHKHYPTTSNSGPTISLEEAVSRSTLNPLAAEFVPSQSRLPTHSKQTTEEKTEQ 310
N VTNG+ PTTS SG S + + + ++ F ++ Q T+
Sbjct: 75 NEKVTNGNLEQPTTSTSGNNPSFPAEGNFNVVTVVSITFCVLH-KIVIGQMQL---MTKF 130
Query: 311 LPVQVQESRDSPESCTVSSPDPEPIVEKTEVS 406
LP P +C +S P +P+ K +VS
Sbjct: 131 LPWMSHNITSLPLAC-ISDPMKKPVPLKLDVS 161
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 27.5 bits (58), Expect = 8.8
Identities = 22/94 (23%), Positives = 32/94 (34%)
Frame = +2
Query: 116 QRERQNRPVTNGHKHYPTTSNSGPTISLEEAVSRSTLNPLAAEFVPSQSRLPTHSKQTTE 295
+ E + P H P+ S P + S + + P S E
Sbjct: 688 ESESSSPPPPAPEGHMPSPPKSTPPVEKSPPTPESEASSPPPPAPEGHTPSPPKSSPP-E 746
Query: 296 EKTEQLPVQVQESRDSPESCTVSSPDPEPIVEKT 397
EK+ +P S +PE T S P P EK+
Sbjct: 747 EKSPPIPPTSHTSPPTPEEYTPSPPKSSPPEEKS 780
>06_02_0168 - 12533753-12533764,12533885-12534169
Length = 98
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 218 STLNPLAAEFVPSQSRLPTHSKQTTEE 298
S LNP+A EF+PS + + + S++ E
Sbjct: 40 SKLNPVAREFIPSSAAVSSLSRKALSE 66
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,820,447
Number of Sequences: 37544
Number of extensions: 223035
Number of successful extensions: 890
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -