Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30880
         (366 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   1.7  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   5.2  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    20   9.1  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    20   9.1  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.2 bits (45), Expect = 1.7
 Identities = 8/25 (32%), Positives = 10/25 (40%)
 Frame = -3

Query: 133 CLVGWLVNANSSCSNRGCAARCCPD 59
           C   +  N N+ C    C    CPD
Sbjct: 693 CTTCFCENGNNKCFTMECPQVTCPD 717


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 20.6 bits (41), Expect = 5.2
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 27  AAXNTENHPS*SGQHRAAQ 83
           AA N +NH   +G H  AQ
Sbjct: 315 AATNNQNHHHHAGHHIHAQ 333


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +2

Query: 113 DQPTNQANKSSS 148
           D+P N +NKS+S
Sbjct: 28  DEPENLSNKSNS 39


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -3

Query: 112 NANSSCSNRGCAARCCPDYDGWFSVFXAAA 23
           N+N S +++   ++   D +G+ SV  AAA
Sbjct: 86  NSNYSSNSKPDCSKGNADQNGYASVVAAAA 115


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,877
Number of Sequences: 336
Number of extensions: 752
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  7510735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)