Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30880
         (366 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo...    25   3.7  
SPCC1494.08c |||conserved fungal protein|Schizosaccharomyces pom...    25   4.9  
SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p...    25   4.9  
SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces pombe...    24   6.4  

>SPBC1604.04 |||thiamine pyrophosphate
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 314

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 105 TLVVRIVVAPLDVVLIMMDGSQCXLR 28
           +++ R ++AP DV+ I M  +Q  LR
Sbjct: 27  SVICRFMIAPFDVIKIRMQITQSSLR 52


>SPCC1494.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 274

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -1

Query: 144 DDLFAWLVGWSMPTLVVRIVVAPLDVVLIMMD 49
           DD+F    GW+ P  +  IV A  D  LI ++
Sbjct: 224 DDIFFGGTGWAEPPKIADIVDAAGDTDLISLE 255


>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 467

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 112 NANSSCSNRGCAAR 71
           N N+ CSN+GCA +
Sbjct: 73  NDNAMCSNQGCAVK 86


>SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 594

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -1

Query: 123 VGWSMPTLVVRIVVAPLDVVLIMM-DGS 43
           +GWS+P+ +   V AP    ++M+ DGS
Sbjct: 421 IGWSVPSAMGYAVAAPERRTIVMVGDGS 448


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 894,695
Number of Sequences: 5004
Number of extensions: 11745
Number of successful extensions: 26
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)