BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= maV30880 (366 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 10_08_0337 + 16900778-16900910,16902205-16902299,16904233-16905708 29 0.85 04_03_0296 - 14041699-14041851,14042623-14042736,14044055-140442... 27 3.4 04_03_0030 + 9747022-9747329,9747415-9747463,9747566-9747617,975... 27 3.4 10_08_0334 + 16859581-16859701,16859729-16860003,16862355-16863839 27 4.5 06_03_0124 - 16942492-16945032,16945478-16945572,16945966-169460... 26 7.9 >10_08_0337 + 16900778-16900910,16902205-16902299,16904233-16905708 Length = 567 Score = 29.5 bits (63), Expect = 0.85 Identities = 12/29 (41%), Positives = 19/29 (65%) Frame = -1 Query: 165 NTVLMREDDLFAWLVGWSMPTLVVRIVVA 79 NTVL+ D W VG+++PTL + + +A Sbjct: 172 NTVLVYLQDNVGWTVGYALPTLGLAVSIA 200 >04_03_0296 - 14041699-14041851,14042623-14042736,14044055-14044209, 14049337-14049388,14049491-14049539,14049622-14049929 Length = 276 Score = 27.5 bits (58), Expect = 3.4 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = +1 Query: 13 FDRTPPQXTLRTIHHNQDNIERRNHDSN 96 FDR + +RT+H QDNIE + + + Sbjct: 223 FDRQELRKLVRTVHMVQDNIENEHEEES 250 >04_03_0030 + 9747022-9747329,9747415-9747463,9747566-9747617, 9752742-9752896,9754217-9754330,9755104-9755256 Length = 276 Score = 27.5 bits (58), Expect = 3.4 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = +1 Query: 13 FDRTPPQXTLRTIHHNQDNIERRNHDSN 96 FDR + +RT+H QDNIE + + + Sbjct: 223 FDRQELRKLVRTVHMVQDNIENEHEEES 250 >10_08_0334 + 16859581-16859701,16859729-16860003,16862355-16863839 Length = 626 Score = 27.1 bits (57), Expect = 4.5 Identities = 12/28 (42%), Positives = 18/28 (64%) Frame = -1 Query: 162 TVLMREDDLFAWLVGWSMPTLVVRIVVA 79 TVL+ D +W VG+ +PTL + + VA Sbjct: 227 TVLVYLQDNVSWTVGYGIPTLGLMVSVA 254 >06_03_0124 - 16942492-16945032,16945478-16945572,16945966-16946076, 16946142-16946229 Length = 944 Score = 26.2 bits (55), Expect = 7.9 Identities = 11/24 (45%), Positives = 13/24 (54%) Frame = -3 Query: 163 YSFNARRRFICLVGWLVNANSSCS 92 + N+R CLVGW NS CS Sbjct: 3 FLLNSRLSSSCLVGWSGTLNSLCS 26 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 5,676,312 Number of Sequences: 37544 Number of extensions: 77944 Number of successful extensions: 204 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 203 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 204 length of database: 14,793,348 effective HSP length: 74 effective length of database: 12,015,092 effective search space used: 564709324 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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