Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30880
         (366 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48455| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.7  
SB_39667| Best HMM Match : rve (HMM E-Value=9e-32)                     26   8.1  

>SB_48455| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 622

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +2

Query: 116 QPTNQANKSSSRIKTVLSQNLL 181
           QP NQ NK+  RI+  L+Q+LL
Sbjct: 387 QPRNQRNKTVVRIRLFLAQSLL 408


>SB_39667| Best HMM Match : rve (HMM E-Value=9e-32)
          Length = 1845

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -1

Query: 183 ISKF*DNTVLMREDDLFAWLVGWSMPTLVVRI 88
           +SK  DN  + + +DL A L G  +P +VVRI
Sbjct: 492 VSKL-DNYPIPKTEDLLAQLGGGGIPNVVVRI 522


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,572,703
Number of Sequences: 59808
Number of extensions: 92090
Number of successful extensions: 254
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 254
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 582596255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)