Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30880
         (366 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g47570.1 68414.m05281 zinc finger (C3HC4-type RING finger) fa...    27   2.9  
At5g46050.1 68418.m05663 proton-dependent oligopeptide transport...    27   3.8  
At4g19460.1 68417.m02862 glycosyl transferase family 1 protein c...    27   5.0  
At5g14940.1 68418.m01753 proton-dependent oligopeptide transport...    26   8.8  
At3g16060.1 68416.m02030 kinesin motor family protein similar to...    26   8.8  
At3g12500.1 68416.m01556 basic endochitinase identical to basic ...    26   8.8  
At1g12330.1 68414.m01425 expressed protein                             26   8.8  

>At1g47570.1 68414.m05281 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam PF00097: Zinc finger, C3HC4
           type (RING finger)
          Length = 466

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 43  RTIHHNQDNIERRNH 87
           RT HHN+D+  +RNH
Sbjct: 441 RTQHHNEDHARKRNH 455


>At5g46050.1 68418.m05663 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 582

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 165 NTVLMREDDLFAWLVGWSMPTLVVRIVV 82
           NTVL+   D   W +G+ +PTL + I +
Sbjct: 205 NTVLVYVQDNVGWTLGYGLPTLGLAISI 232


>At4g19460.1 68417.m02862 glycosyl transferase family 1 protein
           contains Pfam profile: PF00534 Glycosyl transferases
           group 1
          Length = 516

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +3

Query: 24  AAAXNTENHPS*SGQHRAAQPRFEQLELALTNQPTKQI 137
           +++ +  N P  SG  + AQ  + +L+ +LTN P K +
Sbjct: 70  SSSSSDTNQPPWSGDLQTAQFAWNRLDFSLTNPPPKTL 107


>At5g14940.1 68418.m01753 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 552

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 8/27 (29%), Positives = 18/27 (66%)
 Frame = -1

Query: 162 TVLMREDDLFAWLVGWSMPTLVVRIVV 82
           TV+    D F W++G+++PT  + +++
Sbjct: 186 TVMAYIQDTFGWVIGFAIPTASMLLLI 212


>At3g16060.1 68416.m02030 kinesin motor family protein similar to
           kinesin heavy chain member 2 GB:NP_032468 from [Mus
           musculus]; contains Pfam profile PF00225: Kinesin motor
           domain
          Length = 684

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 104 VGIDQPTNQANKSSSRIKTVLSQ 172
           V  DQP NQ +   SR+ T+LSQ
Sbjct: 631 VEADQPGNQLDGYISRLNTILSQ 653


>At3g12500.1 68416.m01556 basic endochitinase identical to basic
           endochitinase precursor SP:P19171 from [Arabidopsis
           thaliana]
          Length = 322

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = -3

Query: 124 GWLVNANSSCSNRGCAARCCP 62
           GW  N    C   GC ++C P
Sbjct: 42  GWCGNTEPYCKQPGCQSQCTP 62


>At1g12330.1 68414.m01425 expressed protein
          Length = 505

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 31  QXTLRTIHHNQDNIERRNHDSNN 99
           Q TL  +HHN     R+ HD N+
Sbjct: 70  QHTLTPLHHNGKPQTRKRHDDND 92


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,597,757
Number of Sequences: 28952
Number of extensions: 62376
Number of successful extensions: 140
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 477939072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)