BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= maV30880 (366 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g47570.1 68414.m05281 zinc finger (C3HC4-type RING finger) fa... 27 2.9 At5g46050.1 68418.m05663 proton-dependent oligopeptide transport... 27 3.8 At4g19460.1 68417.m02862 glycosyl transferase family 1 protein c... 27 5.0 At5g14940.1 68418.m01753 proton-dependent oligopeptide transport... 26 8.8 At3g16060.1 68416.m02030 kinesin motor family protein similar to... 26 8.8 At3g12500.1 68416.m01556 basic endochitinase identical to basic ... 26 8.8 At1g12330.1 68414.m01425 expressed protein 26 8.8 >At1g47570.1 68414.m05281 zinc finger (C3HC4-type RING finger) family protein contains Pfam PF00097: Zinc finger, C3HC4 type (RING finger) Length = 466 Score = 27.5 bits (58), Expect = 2.9 Identities = 9/15 (60%), Positives = 12/15 (80%) Frame = +1 Query: 43 RTIHHNQDNIERRNH 87 RT HHN+D+ +RNH Sbjct: 441 RTQHHNEDHARKRNH 455 >At5g46050.1 68418.m05663 proton-dependent oligopeptide transport (POT) family protein contains Pfam profile: PF00854 POT family Length = 582 Score = 27.1 bits (57), Expect = 3.8 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = -1 Query: 165 NTVLMREDDLFAWLVGWSMPTLVVRIVV 82 NTVL+ D W +G+ +PTL + I + Sbjct: 205 NTVLVYVQDNVGWTLGYGLPTLGLAISI 232 >At4g19460.1 68417.m02862 glycosyl transferase family 1 protein contains Pfam profile: PF00534 Glycosyl transferases group 1 Length = 516 Score = 26.6 bits (56), Expect = 5.0 Identities = 12/38 (31%), Positives = 22/38 (57%) Frame = +3 Query: 24 AAAXNTENHPS*SGQHRAAQPRFEQLELALTNQPTKQI 137 +++ + N P SG + AQ + +L+ +LTN P K + Sbjct: 70 SSSSSDTNQPPWSGDLQTAQFAWNRLDFSLTNPPPKTL 107 >At5g14940.1 68418.m01753 proton-dependent oligopeptide transport (POT) family protein contains Pfam profile: PF00854 POT family Length = 552 Score = 25.8 bits (54), Expect = 8.8 Identities = 8/27 (29%), Positives = 18/27 (66%) Frame = -1 Query: 162 TVLMREDDLFAWLVGWSMPTLVVRIVV 82 TV+ D F W++G+++PT + +++ Sbjct: 186 TVMAYIQDTFGWVIGFAIPTASMLLLI 212 >At3g16060.1 68416.m02030 kinesin motor family protein similar to kinesin heavy chain member 2 GB:NP_032468 from [Mus musculus]; contains Pfam profile PF00225: Kinesin motor domain Length = 684 Score = 25.8 bits (54), Expect = 8.8 Identities = 12/23 (52%), Positives = 15/23 (65%) Frame = +2 Query: 104 VGIDQPTNQANKSSSRIKTVLSQ 172 V DQP NQ + SR+ T+LSQ Sbjct: 631 VEADQPGNQLDGYISRLNTILSQ 653 >At3g12500.1 68416.m01556 basic endochitinase identical to basic endochitinase precursor SP:P19171 from [Arabidopsis thaliana] Length = 322 Score = 25.8 bits (54), Expect = 8.8 Identities = 8/21 (38%), Positives = 10/21 (47%) Frame = -3 Query: 124 GWLVNANSSCSNRGCAARCCP 62 GW N C GC ++C P Sbjct: 42 GWCGNTEPYCKQPGCQSQCTP 62 >At1g12330.1 68414.m01425 expressed protein Length = 505 Score = 25.8 bits (54), Expect = 8.8 Identities = 10/23 (43%), Positives = 13/23 (56%) Frame = +1 Query: 31 QXTLRTIHHNQDNIERRNHDSNN 99 Q TL +HHN R+ HD N+ Sbjct: 70 QHTLTPLHHNGKPQTRKRHDDND 92 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 4,597,757 Number of Sequences: 28952 Number of extensions: 62376 Number of successful extensions: 140 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 138 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 140 length of database: 12,070,560 effective HSP length: 73 effective length of database: 9,957,064 effective search space used: 477939072 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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