BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= maV30879 (726 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 28 1.2 SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 26 4.8 SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm... 26 4.8 SPCC4G3.15c |||CCR4-Not complex subunit Not2 |Schizosaccharomyce... 26 6.3 SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 26 6.3 SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 6.3 SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit... 25 8.3 SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces ... 25 8.3 SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 25 8.3 >SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces pombe|chr 1|||Manual Length = 1727 Score = 28.3 bits (60), Expect = 1.2 Identities = 16/52 (30%), Positives = 29/52 (55%) Frame = -2 Query: 476 NSFQSSAASATRSLGKLVKLNKMVGPLDLNMDIGSHDSDSKTIREKCTLLSN 321 NS S+++ A+R +LV ++ +LN +IG S+ +T++ K L N Sbjct: 1310 NSSTSTSSDASRLKNELVSKENLIE--ELNQEIGHLKSELETVKSKSEDLEN 1359 >SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual Length = 244 Score = 26.2 bits (55), Expect = 4.8 Identities = 15/57 (26%), Positives = 25/57 (43%) Frame = -1 Query: 609 PYKFTAPTLSTSNLGVVHTLL*RTMWSVCVININVWVTYS*ISNEFISKLSCLRYKI 439 PYK P L G+ +T +W CVI ++ +Y +SN + + Y + Sbjct: 74 PYKEFDPVLKFP--GIHYTYSRERLWGTCVILSTLFWSYYVLSNSELLEFEASEYSL 128 >SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1292 Score = 26.2 bits (55), Expect = 4.8 Identities = 11/39 (28%), Positives = 19/39 (48%) Frame = +2 Query: 59 YNPRDNDVNFATSAFVENPATSCDKYRQALEQSLQDMHD 175 YN R+N +S P++S Y A S+++ +D Sbjct: 37 YNQRENSSRSGSSTISREPSSSGTMYPMASRDSMKESYD 75 >SPCC4G3.15c |||CCR4-Not complex subunit Not2 |Schizosaccharomyces pombe|chr 3|||Manual Length = 176 Score = 25.8 bits (54), Expect = 6.3 Identities = 10/25 (40%), Positives = 18/25 (72%) Frame = +1 Query: 385 IFRSNGPTILFNFTSLPRDLVAEAA 459 IF+ + T+ + F ++PRD++ EAA Sbjct: 81 IFQFSDETLFYIFYTMPRDVMQEAA 105 >SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual Length = 1563 Score = 25.8 bits (54), Expect = 6.3 Identities = 14/38 (36%), Positives = 20/38 (52%) Frame = +3 Query: 24 TGPSCRTATPLAITHETTTSTSQLPHSSKIPLPAVTNT 137 T SC AT L +T +TSTS P ++ + + T T Sbjct: 166 TSTSCNPATVLIVTTSGSTSTSCPPPTTILIVTVPTTT 203 >SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 800 Score = 25.8 bits (54), Expect = 6.3 Identities = 16/51 (31%), Positives = 27/51 (52%) Frame = +3 Query: 3 SAMGSCATGPSCRTATPLAITHETTTSTSQLPHSSKIPLPAVTNTGKLWSS 155 ++ S +T S + TP+ T TSTS++ S+ IPL + T ++S Sbjct: 608 NSTSSSSTQVSWNSTTPI-----TGTSTSKVTSSTSIPLTSTNRTSTTFTS 653 Score = 25.4 bits (53), Expect = 8.3 Identities = 13/41 (31%), Positives = 22/41 (53%) Frame = +3 Query: 15 SCATGPSCRTATPLAITHETTTSTSQLPHSSKIPLPAVTNT 137 SC T S +TP+ ++TS++ SS PLP+ + + Sbjct: 76 SCTTDTSA--STPIITESTSSTSSASTTGSSSSPLPSTSTS 114 >SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual Length = 354 Score = 25.4 bits (53), Expect = 8.3 Identities = 12/35 (34%), Positives = 18/35 (51%) Frame = -1 Query: 639 NPKRNIKQHNPYKFTAPTLSTSNLGVVHTLL*RTM 535 NP N +HN Y + TSN+ VV + + T+ Sbjct: 309 NPSINRAKHNIYPHITTAVDTSNIKVVFSAVKETI 343 >SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces pombe|chr 1|||Manual Length = 501 Score = 25.4 bits (53), Expect = 8.3 Identities = 14/36 (38%), Positives = 20/36 (55%) Frame = +2 Query: 587 VGAVNLYGLCCFIFRFGLYIYWILRTIIPSVFLRII 694 VGAV L G F+F + ++ IL I+P L +I Sbjct: 344 VGAVTLCGWISFLFGWHVHEKAILMVILPFSILSLI 379 >SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|||Manual Length = 1367 Score = 25.4 bits (53), Expect = 8.3 Identities = 8/21 (38%), Positives = 14/21 (66%) Frame = +2 Query: 605 YGLCCFIFRFGLYIYWILRTI 667 +G+ F+F+FG ++ W R I Sbjct: 1190 FGVALFVFKFGDFVSWTGRNI 1210 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,970,193 Number of Sequences: 5004 Number of extensions: 61851 Number of successful extensions: 155 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 152 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 155 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 341222980 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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