Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30879
(726 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68131-2|CAA92218.1| 614|Caenorhabditis elegans Hypothetical pr... 55 5e-08
L08970-1|AAA53660.1| 627|Caenorhabditis elegans choline acetylt... 45 5e-05
L08969-1|AAA53659.1| 627|Caenorhabditis elegans choline acetylt... 45 5e-05
AF036701-3|AAB88370.1| 627|Caenorhabditis elegans Abnormal chol... 45 5e-05
AF039047-3|AAB94222.1| 748|Caenorhabditis elegans Carnitine pal... 34 0.12
U64852-5|AAB04968.1| 746|Caenorhabditis elegans Hypothetical pr... 32 0.36
AF068714-1|AAC17808.1| 254|Caenorhabditis elegans Hypothetical ... 29 3.4
AF026209-13|AAB71271.2| 351|Caenorhabditis elegans Seven tm rec... 28 5.9
Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z68342-2|CAA92772.2| 424|Caenorhabditis elegans Hypothetical pr... 28 7.8
>Z68131-2|CAA92218.1| 614|Caenorhabditis elegans Hypothetical
protein B0395.3 protein.
Length = 614
Score = 55.2 bits (127), Expect = 5e-08
Identities = 23/60 (38%), Positives = 37/60 (61%)
Frame = +2
Query: 17 MCYGPLVPDGYATCYNPRDNDVNFATSAFVENPATSCDKYRQALEQSLQDMHDLLLKVTK 196
MC+GP D Y CYNP++ +++F S F +TS K+ + L+++L DM ++ K TK
Sbjct: 550 MCFGPSALDCYGICYNPQETELHFMISTFKSYGSTSSKKFAKELQKALIDMKSVINKATK 609
>L08970-1|AAA53660.1| 627|Caenorhabditis elegans choline
acetyltransferase protein.
Length = 627
Score = 45.2 bits (102), Expect = 5e-05
Identities = 20/58 (34%), Positives = 36/58 (62%)
Frame = +2
Query: 8 DGFMCYGPLVPDGYATCYNPRDNDVNFATSAFVENPATSCDKYRQALEQSLQDMHDLL 181
D ++ YG +V DGY YN + + V FA +AF +P T ++++L +++D+ +LL
Sbjct: 568 DCYLTYGAVVRDGYGCPYNIQPDRVIFAPTAFRSDPRTDLQHFKKSLAGAMRDVKELL 625
>L08969-1|AAA53659.1| 627|Caenorhabditis elegans choline
acetyltransferase protein.
Length = 627
Score = 45.2 bits (102), Expect = 5e-05
Identities = 20/58 (34%), Positives = 36/58 (62%)
Frame = +2
Query: 8 DGFMCYGPLVPDGYATCYNPRDNDVNFATSAFVENPATSCDKYRQALEQSLQDMHDLL 181
D ++ YG +V DGY YN + + V FA +AF +P T ++++L +++D+ +LL
Sbjct: 568 DCYLTYGAVVRDGYGCPYNIQPDRVIFAPTAFRSDPRTDLQHFKKSLAGAMRDVKELL 625
>AF036701-3|AAB88370.1| 627|Caenorhabditis elegans Abnormal choline
acetyltransferaseprotein 1, isoform b protein.
Length = 627
Score = 45.2 bits (102), Expect = 5e-05
Identities = 20/58 (34%), Positives = 36/58 (62%)
Frame = +2
Query: 8 DGFMCYGPLVPDGYATCYNPRDNDVNFATSAFVENPATSCDKYRQALEQSLQDMHDLL 181
D ++ YG +V DGY YN + + V FA +AF +P T ++++L +++D+ +LL
Sbjct: 568 DCYLTYGAVVRDGYGCPYNIQPDRVIFAPTAFRSDPRTDLQHFKKSLAGAMRDVKELL 625
>AF039047-3|AAB94222.1| 748|Caenorhabditis elegans Carnitine
palmitoyl transferaseprotein 4 protein.
Length = 748
Score = 33.9 bits (74), Expect = 0.12
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +2
Query: 23 YGPLVPDGYATCYNPRDN-DVNFATSAFVENPATSCDKYRQALEQSLQDMHDL 178
+G + DGY CY N + +++ +PAT D++ Q L +++ + DL
Sbjct: 682 FGAVAQDGYGICYRFAGNRAIMVHITSYHSSPATDSDRFGQHLREAIHTLADL 734
>U64852-5|AAB04968.1| 746|Caenorhabditis elegans Hypothetical
protein W01A11.5 protein.
Length = 746
Score = 32.3 bits (70), Expect = 0.36
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +2
Query: 20 CYGPLVPDGYATCYNPRDNDVNFATSAFVENPA-TSCDKYRQALEQSLQDMHDLLL 184
C+G + DGY CY N FA + A T K+ + L +S ++ +L +
Sbjct: 691 CFGAVAADGYGICYRFGGNHGIFANITSYHSAANTDSTKFAKLLSESFHELSNLFV 746
>AF068714-1|AAC17808.1| 254|Caenorhabditis elegans Hypothetical
protein B0348.5 protein.
Length = 254
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/38 (42%), Positives = 18/38 (47%)
Frame = -2
Query: 476 NSFQSSAASATRSLGKLVKLNKMVGPLDLNMDIGSHDS 363
NSF + SA SL +L GP L GSHDS
Sbjct: 102 NSFNGATNSAIPSLRELATYASRYGPAYLRERFGSHDS 139
>AF026209-13|AAB71271.2| 351|Caenorhabditis elegans Seven tm
receptor protein 20 protein.
Length = 351
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = -3
Query: 379 SVVTILIQKLFGRNAHYYQILNLCYKYSF*IMDVMES*HCNNNYSYLINCLHFI 218
+++ I+I K +N Y+ L + + + ++E C N +SY + L FI
Sbjct: 33 TILIIIIVKFSNKNVGSYKYLMIIFSVLGTLFSIVEGILCPNEHSYTASWLLFI 86
>Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical
protein C30H6.11 protein.
Length = 460
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +3
Query: 24 TGPSCRTATPLAITHETTTSTSQLPHSSKIPLPAVTNT 137
T P+ T TP T TTT T++ + P T T
Sbjct: 93 TTPTTTTTTPTTTTETTTTPTTETTTTPTTTTPTTTTT 130
>Z68342-2|CAA92772.2| 424|Caenorhabditis elegans Hypothetical
protein F38E11.3 protein.
Length = 424
Score = 27.9 bits (59), Expect = 7.8
Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +2
Query: 164 DMHDLLLKVTKSKL*YDMYEM*TIYE-IRVVIITVLTFHYVHY 289
+M+ L+ +VTK K+ Y Y + T E I I TV FHYVH+
Sbjct: 88 NMYGLVAEVTKEKI-YQ-YCLSTFKEMINAGITTVGEFHYVHH 128
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,117,904
Number of Sequences: 27780
Number of extensions: 334443
Number of successful extensions: 916
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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