Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30879
         (726 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    23   2.2  
AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          22   6.8  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   9.0  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   9.0  

>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +2

Query: 233 IYEIRVVIITVLTFHYVHYLKRILITQIKDLIVMCISPE 349
           +Y+ +V +IT+L  H V   ++ +I    D     +SP+
Sbjct: 451 VYQTKVGLITILRNHKVEVCEKTIIPYEFDPGAFLLSPK 489


>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 59  YNPRDNDVNFATSAFVENPATSCDKY 136
           Y P   +V+ + S  V +P T+ D Y
Sbjct: 40  YGPEAGNVSCSVSWEVHDPVTNSDTY 65


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -3

Query: 526 VCYKYQCMGYLQLNFKRIHFKAQLPPLQDL 437
           V  KYQ +    LNF  ++F+    P+  L
Sbjct: 376 VSNKYQKIANGDLNFNEVNFRILNAPVNQL 405


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 239 EIRVVIITVLTFHY 280
           EIR+ + T+ TF Y
Sbjct: 207 EIRIFVATIFTFSY 220


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,648
Number of Sequences: 438
Number of extensions: 5071
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)