Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30878
         (573 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep: L...    34   2.7  
UniRef50_Q23U98 Cluster: DNA-directed RNA polymerase, beta subun...    33   3.6  
UniRef50_Q184A3 Cluster: Phage protein; n=7; root|Rep: Phage pro...    33   6.3  
UniRef50_A5Z6D5 Cluster: Putative uncharacterized protein; n=1; ...    32   8.3  

>UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep: Like
           moricin - Manduca sexta (Tobacco hawkmoth) (Tobacco
           hornworm)
          Length = 248

 Score = 33.9 bits (74), Expect = 2.7
 Identities = 14/21 (66%), Positives = 16/21 (76%)
 Frame = +2

Query: 500 DGDHLPSGGPYARLPTKAIKK 562
           DG+H PSG PYA LPT+A  K
Sbjct: 3   DGNHSPSGRPYASLPTRAKMK 23


>UniRef50_Q23U98 Cluster: DNA-directed RNA polymerase, beta subunit
           family protein; n=6; Tetrahymena thermophila SB210|Rep:
           DNA-directed RNA polymerase, beta subunit family protein
           - Tetrahymena thermophila SB210
          Length = 685

 Score = 33.5 bits (73), Expect = 3.6
 Identities = 17/43 (39%), Positives = 27/43 (62%)
 Frame = -2

Query: 290 TVTLLDNEKKNSQLSHRYYSLRLLNNYITFKNRQYSVGLETNH 162
           T+T +  +  NS +  R  SLR+++N   F+N+Q+S  LET H
Sbjct: 148 TMTGISKQLPNSSIPARIASLRMVSNTPIFRNQQHS-SLETRH 189


>UniRef50_Q184A3 Cluster: Phage protein; n=7; root|Rep: Phage
           protein - Clostridium difficile (strain 630)
          Length = 436

 Score = 32.7 bits (71), Expect = 6.3
 Identities = 27/87 (31%), Positives = 42/87 (48%)
 Frame = -2

Query: 287 VTLLDNEKKNSQLSHRYYSLRLLNNYITFKNRQYSVGLETNHTITFTGGRTXL*VRAGRY 108
           VTLLDN+K ++Q++     L+  N+YIT+K       LE +  + FTGG     V    Y
Sbjct: 135 VTLLDNKKVDTQIAKVITDLQ-DNDYITWKK---DATLEASAGLVFTGGTNGEAVTGAEY 190

Query: 107 HHRAYFCREAVMRFGLKGGAAVVTILR 27
             +A+  +     F   G  A  T ++
Sbjct: 191 --QAFLDKIESYSFNALGCLATTTEIK 215


>UniRef50_A5Z6D5 Cluster: Putative uncharacterized protein; n=1;
           Eubacterium ventriosum ATCC 27560|Rep: Putative
           uncharacterized protein - Eubacterium ventriosum ATCC
           27560
          Length = 360

 Score = 32.3 bits (70), Expect = 8.3
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = -2

Query: 281 LLDNEKKNSQLSHRYYSLRLLNNYITFKNR 192
           L+D  +K + +  RY S R+LNNYI F N+
Sbjct: 313 LIDGYRKITVIDIRYVSSRILNNYIKFDNQ 342


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 529,903,941
Number of Sequences: 1657284
Number of extensions: 9649886
Number of successful extensions: 20798
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20783
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 39154548218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)