Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30878
         (573 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    29   0.48 
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce...    25   6.0  
SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    25   6.0  

>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 29.1 bits (62), Expect = 0.48
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +3

Query: 54  ALQAETHYC--FTAEIGAVVVPTRADSQXCPTTSKSNCMIRFKTNTILS 194
           A+ A+T Y   FT ++   V PT   S    TTS S+      T+++ S
Sbjct: 15  AVMAQTEYTPGFTTDVATTVTPTPLPSANVTTTSFSSASTETSTHSVTS 63


>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1067

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -2

Query: 515 VSGHRRSWMSAMPG 474
           + GHRR+++ AMPG
Sbjct: 613 IKGHRRTYIGAMPG 626


>SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 398

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 269 EKKNSQLSHRYYSLRLLNNYITFKN 195
           E+K S L +     RL++NY+T K+
Sbjct: 169 ERKGSSLEYTLQKYRLVSNYLTTKD 193


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,223,411
Number of Sequences: 5004
Number of extensions: 42360
Number of successful extensions: 92
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)