Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30878
         (573 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18985| Best HMM Match : TUDOR (HMM E-Value=8.3e-37)                 30   1.5  
SB_58739| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.7  
SB_11120| Best HMM Match : DUF1080 (HMM E-Value=0.082)                 28   4.7  
SB_25841| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  

>SB_18985| Best HMM Match : TUDOR (HMM E-Value=8.3e-37)
          Length = 1219

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 522 PDGKWSPSLVDVSNARGKGKCCL 454
           PDG WSPS++   N+   GK C+
Sbjct: 491 PDGSWSPSIISKLNSLVVGKDCV 513



 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 522 PDGKWSPSLVDVSNARGKGKCCL 454
           PDG WSP ++   N+   GK C+
Sbjct: 520 PDGSWSPPIISKLNSLVVGKDCV 542


>SB_58739| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 130

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -1

Query: 552 AFVGRRAYGPP-DGKWSPSLVDVSNARGK 469
           AF G  + GPP  GKW  + VDV   RGK
Sbjct: 74  AFSGPCSGGPPLGGKWFSAHVDVIGTRGK 102


>SB_11120| Best HMM Match : DUF1080 (HMM E-Value=0.082)
          Length = 748

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -1

Query: 552 AFVGRRAYGPP-DGKWSPSLVDVSNARGK 469
           AF G  + GPP  GKW  + VDV   RGK
Sbjct: 313 AFSGPCSGGPPLGGKWFSAHVDVIGTRGK 341


>SB_25841| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 469

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = -2

Query: 290 TVTLLDNEKKNSQLSHRYYSLRLLNNY--ITFKNRQYSVGLETNHT 159
           T  +LDN   +  L +RY SL L N Y  +   NR  S+ L+  +T
Sbjct: 286 TSLVLDNRSTSLVLDNRYTSLVLDNRYTSLVLDNRYTSLVLDNRYT 331



 Score = 27.5 bits (58), Expect = 8.2
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = -2

Query: 293 FTVTLLDNEKKNSQLSHRYYSLRLLNNY--ITFKNRQYSVGLETNHT 159
           +T  +LDN   +  L +RY SL L N Y  +   NR  S+ L+ + T
Sbjct: 303 YTSLVLDNRYTSLVLDNRYTSLVLDNRYTSLVLDNRYTSLVLDNSST 349


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,367,594
Number of Sequences: 59808
Number of extensions: 305085
Number of successful extensions: 697
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)