BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= maV30878 (573 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical ... 28 4.1 AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical ... 28 4.1 AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical ... 28 4.1 AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein. 28 4.1 >AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical protein Y47H9C.4c protein. Length = 1045 Score = 28.3 bits (60), Expect = 4.1 Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 1/31 (3%) Frame = -1 Query: 549 FVGRRAYGP-PDGKWSPSLVDVSNARGKGKC 460 F G R P PD KW P+ V + GKC Sbjct: 185 FQGERCEKPCPDNKWGPNCVKSCPCQNGGKC 215 >AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical protein Y47H9C.4b protein. Length = 1070 Score = 28.3 bits (60), Expect = 4.1 Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 1/31 (3%) Frame = -1 Query: 549 FVGRRAYGP-PDGKWSPSLVDVSNARGKGKC 460 F G R P PD KW P+ V + GKC Sbjct: 185 FQGERCEKPCPDNKWGPNCVKSCPCQNGGKC 215 >AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical protein Y47H9C.4a protein. Length = 1111 Score = 28.3 bits (60), Expect = 4.1 Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 1/31 (3%) Frame = -1 Query: 549 FVGRRAYGP-PDGKWSPSLVDVSNARGKGKC 460 F G R P PD KW P+ V + GKC Sbjct: 185 FQGERCEKPCPDNKWGPNCVKSCPCQNGGKC 215 >AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein. Length = 1111 Score = 28.3 bits (60), Expect = 4.1 Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 1/31 (3%) Frame = -1 Query: 549 FVGRRAYGP-PDGKWSPSLVDVSNARGKGKC 460 F G R P PD KW P+ V + GKC Sbjct: 185 FQGERCEKPCPDNKWGPNCVKSCPCQNGGKC 215 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,339,283 Number of Sequences: 27780 Number of extensions: 234897 Number of successful extensions: 455 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 446 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 455 length of database: 12,740,198 effective HSP length: 78 effective length of database: 10,573,358 effective search space used: 1184216096 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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