BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= maV30875 (680 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII... 33 0.029 SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 25 7.7 SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 25 7.7 >SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual Length = 374 Score = 33.5 bits (73), Expect = 0.029 Identities = 17/49 (34%), Positives = 26/49 (53%) Frame = +3 Query: 57 ADLPRHRLVQDQRIQIRLPVHCPNERDRISGARSAELRVHIRDIREGSL 203 A L H ++ ++ R HCP E + S RS+ L+ HI I EG++ Sbjct: 217 AHLRHHVVLHQTTLEERKTYHCPMEGCKKSFTRSSALKKHISVIHEGNM 265 >SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr 2|||Manual Length = 1919 Score = 25.4 bits (53), Expect = 7.7 Identities = 13/29 (44%), Positives = 17/29 (58%) Frame = -2 Query: 199 DPSRISRICTRSSADRAPDILSRSFGQ*T 113 D S+IS I +++ DILSRS G T Sbjct: 394 DQSKISEIAVKTAMASTADILSRSKGSAT 422 >SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pombe|chr 1|||Manual Length = 1375 Score = 25.4 bits (53), Expect = 7.7 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 3/30 (10%) Frame = +3 Query: 546 YFYSIS---SILRDNFKNNFYILTCDIRYK 626 YF+ S S+ + F+N FY+L D+R K Sbjct: 699 YFFIASAYFSLKNEKFENEFYLLAQDLRRK 728 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,263,234 Number of Sequences: 5004 Number of extensions: 45998 Number of successful extensions: 127 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 124 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 126 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 313902888 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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