Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30875
         (680 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII...    33   0.029
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    25   7.7  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    25   7.7  

>SPAC144.09c |sfc2||RNA polymerase III transcription factor
           TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 33.5 bits (73), Expect = 0.029
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = +3

Query: 57  ADLPRHRLVQDQRIQIRLPVHCPNERDRISGARSAELRVHIRDIREGSL 203
           A L  H ++    ++ R   HCP E  + S  RS+ L+ HI  I EG++
Sbjct: 217 AHLRHHVVLHQTTLEERKTYHCPMEGCKKSFTRSSALKKHISVIHEGNM 265


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 199 DPSRISRICTRSSADRAPDILSRSFGQ*T 113
           D S+IS I  +++     DILSRS G  T
Sbjct: 394 DQSKISEIAVKTAMASTADILSRSKGSAT 422


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1375

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
 Frame = +3

Query: 546 YFYSIS---SILRDNFKNNFYILTCDIRYK 626
           YF+  S   S+  + F+N FY+L  D+R K
Sbjct: 699 YFFIASAYFSLKNEKFENEFYLLAQDLRRK 728


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,263,234
Number of Sequences: 5004
Number of extensions: 45998
Number of successful extensions: 127
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)