Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30874
(792 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces pom... 221 1e-58
SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces ... 171 1e-43
SPAC15E1.06 |vps29||retromer complex subunit Vps29|Schizosacchar... 28 1.3
SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyc... 27 3.1
SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|... 27 4.1
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p... 27 4.1
SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|... 27 4.1
SPBC342.03 |||1,3-beta-glucanosyltransferase |Schizosaccharomyce... 26 5.4
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S... 26 7.1
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc... 25 9.4
SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2 |Schizosacc... 25 9.4
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy... 25 9.4
>SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 437
Score = 221 bits (539), Expect = 1e-58
Identities = 103/203 (50%), Positives = 138/203 (67%)
Frame = +3
Query: 183 WNNVQMGPPDVILGITEAYKKDTHPKKVNLGVGAYRDDEGKPFVLPSVRKAEEILHSRGL 362
W +V MGPPD I GITEAYKKD KK+NLG G YRDD GKP+VLPSVR+AE L S+ L
Sbjct: 40 WADVPMGPPDPIFGITEAYKKDGDVKKMNLGAGTYRDDAGKPYVLPSVRQAETELLSQKL 99
Query: 363 NHEYAPISGEATYTDAVAKLAFGEDSPVIKNKSNCTVQTLSGTGALRLGLEFITKHYAKA 542
+ EYAPI+G ++ KLA+G+ IK++ + Q++SGTGAL + F+ Y +
Sbjct: 100 DKEYAPITGIPSFRVQATKLAYGDVYESIKDRL-VSAQSISGTGALCIAANFLASFY-PS 157
Query: 543 KEIWLPTPTWGNHPQICNTLNLPHKKYRYFDPKTNGFDLQGALEDISKIPEGSIILLHAC 722
K I++ PTWGNH + + L K Y+Y+DP T G D++G L D++ P+GSIILLHAC
Sbjct: 158 KTIYVSDPTWGNHKNVFSRAGLTVKSYKYYDPATRGLDIKGMLSDLTSAPDGSIILLHAC 217
Query: 723 AHNPTGVDPKPNDWEQLSKVIKE 791
AHNPTGVDP W+ + K +++
Sbjct: 218 AHNPTGVDPTKAQWDDILKTMQK 240
>SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 409
Score = 171 bits (415), Expect = 1e-43
Identities = 81/195 (41%), Positives = 112/195 (57%), Gaps = 3/195 (1%)
Frame = +3
Query: 189 NVQMGPPDVILGITEAYKKDTHPKKVNLGVGAYRDDEGKPFVLPSVRKAEEILHSRG-LN 365
N++ D I + Y +D PKKVN+ VGAYRDD GKP++LP+V+KA +I+ + N
Sbjct: 8 NIEEAKADAIFKLNAQYHQDEDPKKVNMSVGAYRDDTGKPWILPAVKKASKIVEEQASFN 67
Query: 366 HEYAPISGEATYTDAVAKLAFGEDSPVIKNKSNCTVQTLSGTGALRLGLEFITKHYAK-- 539
HEY PI+G +T A A++ F + ++ ++Q++SGTGA L FI Y K
Sbjct: 68 HEYLPIAGLPRFTKAAAEVLFRPNPHLLSEDRVASMQSVSGTGANFLAASFIETFYVKHT 127
Query: 540 AKEIWLPTPTWGNHPQICNTLNLPHKKYRYFDPKTNGFDLQGALEDISKIPEGSIILLHA 719
+++ PTW H + L + Y Y+D K FD +G L I PEGSI LLHA
Sbjct: 128 GAHVYISNPTWPVHRTLWEKLGVTVDTYPYWDAKNRSFDYEGMLSTIKSAPEGSIFLLHA 187
Query: 720 CAHNPTGVDPKPNDW 764
CAHNPTG+DP W
Sbjct: 188 CAHNPTGIDPTREQW 202
>SPAC15E1.06 |vps29||retromer complex subunit
Vps29|Schizosaccharomyces pombe|chr 1|||Manual
Length = 187
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -3
Query: 721 HACNRIMEPSGIFDISSSAPCKSKPLVLGS 632
H C+ + G FDISS AP K + LGS
Sbjct: 51 HVCSDLKLVKGAFDISSKAPIAGK-ITLGS 79
>SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 553
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -2
Query: 629 VTVFLVRQVEGVADLRVVSPSRRREPDLLCLSVVFRYEL 513
+T L++ + G+ RV S RR P +LC S++ + L
Sbjct: 80 LTGILIQPIAGILSDRVNSRIGRRRPFMLCASLLGTFSL 118
>SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|chr
3|||Manual
Length = 418
Score = 26.6 bits (56), Expect = 4.1
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = -2
Query: 341 FFCLSDRRQNKWFSLIISICSNTKIYFFRMCVLLVC 234
F C+ D R N +LI S CS + FF +LLVC
Sbjct: 224 FGCVKDGRLNLNKALICSTCSISAALFF--ILLLVC 257
>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 749
Score = 26.6 bits (56), Expect = 4.1
Identities = 11/24 (45%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Frame = -2
Query: 305 FSLIISICS-NTKIYFFRMCVLLV 237
F+L+ +CS N+K++FFR VL +
Sbjct: 564 FALVDELCSLNSKLWFFRKSVLTI 587
>SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|chr
3|||Manual
Length = 402
Score = 26.6 bits (56), Expect = 4.1
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = -2
Query: 341 FFCLSDRRQNKWFSLIISICSNTKIYFFRMCVLLVC 234
F C+ D R N +LI S CS + FF +LLVC
Sbjct: 214 FGCVKDGRLNLNKALICSTCSISAALFF--ILLLVC 247
>SPBC342.03 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 456
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +3
Query: 666 ALEDISKIPEGSIILLHACAHNPTGVDPKPNDW 764
A E + ++PEG+ I + A P G++ N W
Sbjct: 359 AWEKLPEMPEGAKIYMEKGAGEPLGIEGPTNMW 391
>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
Mde10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 512
Score = 25.8 bits (54), Expect = 7.1
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = -3
Query: 769 CSQSLGLGSTPVGLCAHACNRIMEPSGIFDIS-SSAPCK 656
C SLG+GS G+C A + + + +S S CK
Sbjct: 406 CQDSLGMGSCASGVCTSASRQCKKLTNFSSLSCHSDSCK 444
>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 987
Score = 25.4 bits (53), Expect = 9.4
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Frame = -2
Query: 560 REPDLLCLSVVFRYELESKAESASAGQCLYSTVAL--IFDDRAVFSKSQFSYSISICGLT 387
R P+L L + R E+ S YST +L F D++V S S S S ++
Sbjct: 2 RRPNLDRLRLKSRQGFETSVSKPSTPS--YSTYSLSPTFSDKSVLSPSTMSDSYALSSTY 59
Query: 386 TDGS 375
T GS
Sbjct: 60 TAGS 63
>SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 25.4 bits (53), Expect = 9.4
Identities = 15/51 (29%), Positives = 21/51 (41%)
Frame = +3
Query: 555 LPTPTWGNHPQICNTLNLPHKKYRYFDPKTNGFDLQGALEDISKIPEGSII 707
LPT TWG PQ +N + +Q +LE + P SI+
Sbjct: 297 LPTVTWGTSPQDVIPINGNIPDPAHVKDNVRAASIQRSLEYMGLKPNTSIV 347
>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 800
Score = 25.4 bits (53), Expect = 9.4
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = +3
Query: 636 PKTNGFDLQGALEDISKIPEGSIILLHACAHNPTGVDPKPNDWEQLSKVIK 788
PK LQG ++ S P G ++L+ + + N V + D + S + K
Sbjct: 357 PKNTSKQLQGLVQFSSVSPNGELLLMSSSSFNGHSVSVQEYDLTKDSTIRK 407
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,504,124
Number of Sequences: 5004
Number of extensions: 80108
Number of successful extensions: 227
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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